# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha07076.fasta.huge -Q ../query/KIAA0255.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0255, 692 aa
 vs ./tmplib.23147 library

1986813 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.2255+/-0.00419; mu= 18.0902+/- 0.286
 mean_var=75.7945+/-17.501, 0's: 0 Z-trim: 1  B-trim: 0 in 0/40
 Lambda= 0.147318

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0956  ( 672 res)   hj05590                     ( 672)  125 36.5  0.0095


>>KIAA0956  ( 672 res)   hj05590                          (672 aa)
 initn: 143 init1:  99 opt: 125  Z-score: 141.2  bits: 36.5 E(): 0.0095
Smith-Waterman score: 129;  22.308% identity (51.538% similar) in 260 aa overlap (388-639:306-541)

       360       370       380       390       400       410       
KIAA02 DIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIV-IFVAM
                                     :. :. :.  .:.: .   ::  . . ...
KIAA09 MEVCRNCSAVLCCRMAPLQKAKVIRLIKISPEKPITLA--VGDGANDVSMIQEAHVGIGI
         280       290       300       310         320       330   

        420        430         440       450       460       470   
KIAA02 LGMLS-PSSRGALMTTACFLFM--FMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGV
       .:  .  ..:.. .. : : :.  .. : : :   :.   ..   .:.  : :    :  
KIAA09 MGKEGRQAARNSDYAIARFKFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFIT----PQF
           340       350       360       370       380             

           480       490       500       510       520       530   
KIAA02 VFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRT
       ..     . : ......     . :.  . :.    :::..     ... .:  :  :  
KIAA09 LYQ----FYC-LFSQQTLYDSVYLTLYNI-CF---TSLPILI----YSLLEQHVDPHVLQ
     390            400       410           420           430      

             540       550       560       570       580           
KIAA02 NQ--IPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLF--L
       :.  . :.: ..:  .  .  .:.  :: :.  :: .:  .  : ..      : .:   
KIAA09 NKPTLYRDISKNR--LLSIKTFLYWTILGFSHAFIFFFGSYLLIGKDTSLLGNGQMFGNW
        440         450       460       470       480       490    

     590       600       610       620       630       640         
KIAA02 VFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF
       .:  :: .   . .. :  ..  : . : : : ::. :: .. .:...::          
KIAA09 TFGTLVFT---VMVITVTVKMALETHFWTWINHLVTWGSIIFYFVFSLFYGGILWPFLGS
          500          510       520       530       540       550 

     650       660       670       680       690                   
KIAA02 IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID                 
                                                                   
KIAA09 QNMYFVFIQLLSSGSAWFAIILMVVTCLFLDIIKKVFDRHLHPTSTEKAQLTETNAGIKC
             560       570       580       590       600       610 




692 residues in 1 query   sequences
1986813 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:33 2008 done: Thu Dec 18 15:13:34 2008
 Total Scan time:  0.540 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]