hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21352471/chunk_1/iprscan-20080501-21352471.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0251 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00282.9.fs Pyridoxal-dependent decarboxylase conse 50.2 2e-14 2 PF00282.9.ls Pyridoxal-dependent decarboxylase conse -105.7 2.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00282.9.ls 1/1 133 427 .. 1 399 [] -105.7 2.1e-07 PF00282.9.fs 1/2 246 301 .. 186 247 .. 45.8 3.6e-13 Alignments of top-scoring domains: PF00282.9.ls: domain 1 of 1, from 133 to 427: score -105.7, E = 2.1e-07 *->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp y l+ e++ + +il+D + t W + + y KIAA0251 133 --YISTLDKEKLRKLTT---RILSD---T-----TLWL-CRIFRYEN 165 agnSypalLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke +c++F e+ ++ l+k+ l KIAA0251 166 -----------------GCAYFHEEE---------REG--LAKICRLA-- 185 flgssgsqGGGvlqgggSESnLlallAARtkwlrrmkargkpldsseIlg +s R+ + +g+ + + KIAA0251 186 -IHS------------------------RYEDF---VVDGFN---VLYNK 204 KLVlYtSdqa.....HsSvmeKaak....iagVktdnlrlipsdedngkm K+V+Y S+ a+++ +++ +++ + +++V + + ++ ++m KIAA0251 205 KPVIYLSAAArpglgQYLC-NQLGLpfpcLCRVP---CNTVFGSQ--HQM 248 rgddLekaIeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgie +++ Lek+I +d+erG P+ ++A++GT +g +D + +l ++c+ KIAA0251 249 DVAFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQ---- 294 tGydlWlHVDAAyaGsAfIcPefRhelpwlfGiEra..........DSis y++WlHV G + + ++++++++ + DS + KIAA0251 295 --YGIWLHVE----G-------VNL---ATLALGYVsssvlaaakcDSMT 328 fnPHKwmlvll.dCsalwvKdksaLqdalsvnpeYLkhndkqsdvavDfk +P w++ ++ + +l d+ aL +l + L s++ +D KIAA0251 329 MTPGPWLGLPAvPAVTLYKHDDPAL--TL---VAGLT-----SNKPTD-- 366 twqIplSRgnrfriLKlWfvlRsyGveglqnhIrehvelAkyfedlvrkd + r+L lW+ l +G g+ ++I + ++l++ + + ++k KIAA0251 367 ----------KLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKKV 406 grdFeivadpernlglVcFrlK<-* ++v e ++ V+Fr KIAA0251 407 NYIKILVE-DELSSPVVVFRFF 427 PF00282.9.fs: domain 1 of 2, from 246 to 301: score 45.8, E = 3.6e-13 *->gkmrgddLekaIeedkerGLiPffVcATlGTTvsgaFDnlqelgdic ++m+++ Lek+I +d+erG P+ ++A++GT +g +D + +l ++c KIAA0251 246 HQMDVAFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELC 292 aklgietGydlWlHV<-* + y++WlHV KIAA0251 293 EQ------YGIWLHV 301 //