# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02790.fasta.huge -Q ../query/KIAA0250.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0250, 1122 aa vs ./tmplib.23147 library 1986383 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 13.2284+/-0.0107; mu= -24.0981+/- 0.720 mean_var=552.4149+/-133.751, 0's: 0 Z-trim: 7 B-trim: 5 in 1/39 Lambda= 0.054568 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0732 ( 1449 res) fg05988b (1449) 340 42.5 0.00051 >>KIAA0732 ( 1449 res) fg05988b (1449 aa) initn: 295 init1: 171 opt: 340 Z-score: 163.9 bits: 42.5 E(): 0.00051 Smith-Waterman score: 348; 24.063% identity (52.465% similar) in 507 aa overlap (12-438:590-1077) 10 20 30 KIAA02 GRQHPRCRGAAPRSLRDPRRLRGKTRRRR-----RRMSLQS : : .:.... . : . : . . . KIAA07 YPVGPTNGVYPGPYYPGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVAD 560 570 580 590 600 610 40 50 60 70 80 90 KIAA02 AQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAF : :. ...:. : : : .. : : .::.. .. :.:.. ...:.: ::..:: KIAA07 NQELQLSNLLSRDRI-SPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAF 620 630 640 650 660 670 100 110 120 130 140 150 KIAA02 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQ . : .. .:. : ... : .:. .: :. .:::.: .... : . . KIAA07 YQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLA 680 690 700 710 720 730 160 170 180 190 200 210 KIAA02 LGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTS------QAESYYRHAA . ..: :... : : .::: :::::::.:.: .:.:.: .: KIAA07 IRSKPLRKTVKYALISAQ--RC-MICQ------GDIARYREQASDTANYGKARSWYLKAQ 740 750 760 770 780 220 230 240 250 260 KIAA02 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ------KALSKA ...:.::.::::::.:: .: ...:: ::.:.. :. .:. .:. : .. KIAA07 HIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQ 790 800 810 820 830 840 270 KIAA02 LESR-----DEVKTKW-------------------------------------------G .:.. : .: : KIAA07 MEKKQHEEFDLSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENG 850 860 870 880 890 900 280 290 300 310 320 KIAA02 V-----SD----FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQKA--FNSQQL . :: :: .:.. ::... ..: . . ::. ..:. :: .. ..: .. KIAA07 LGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRM 910 920 930 940 950 960 330 340 350 360 370 380 KIAA02 VHVTVINLFQLHH--LRD-FSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNES ... .::.: .:. :.: ::.: .. : : ::.: :.: : : : .:: KIAA07 LQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALG----LAMF-SLLVRRCTC-LLKES 970 980 990 1000 1010 1020 390 400 410 420 430 440 KIAA02 QEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWP-WLISLLNSFHPHEEDLSSI . . .. : . ..: ... : . . .: :... ....: .: KIAA07 AKAQLSS---PEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLP 1030 1040 1050 1060 1070 1080 450 460 470 480 490 500 KIAA02 SATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQ KIAA07 SHVAVDVWSTLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDP 1090 1100 1110 1120 1130 1140 1122 residues in 1 query sequences 1986383 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:22 2008 done: Thu Dec 18 15:13:23 2008 Total Scan time: 0.720 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]