hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21315861/chunk_1/iprscan-20080501-21315861.nocrc
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Query sequence: KIAA0249
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00775                                                 379.7   1.8e-109   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00775    1/1     691   847 ..     1   159 []   379.7 1.8e-109

Alignments of top-scoring domains:
SM00775: domain 1 of 1, from 691 to 847: score 379.7, E = 1.8e-109
                   *->iViSDIDGTITKSDvLGHvlpmiGkDDWtHpGVAkLytkIqnnGYkI
                      i+iSDIDGTITKSD+LG++lp++Gk DWtH+G+AkLy+ I++nGYk+
    KIAA0249   691    IIISDIDGTITKSDALGQILPQLGK-DWTHQGIAKLYHSINENGYKF 736  

                   lYLTARaigQadsTrsYLkqvkQdGnhnLPdGPVllsPdrlfaALhREVI
                   lY++ARaig+ad+Tr YL++v+++G + LP+GP++lsP++lf+A+hREVI
    KIAA0249   737 LYCSARAIGMADMTRGYLHWVNDKG-TILPRGPLMLSPSSLFSAFHREVI 785  

                   skkPevFKiacLrdirnlFppqgnpFyAGFGNRitDvisYravgippsrI
                   +kkPe+FKi cL+di+nlF+p+++pFyA+FGNR++Dv++Y++vg+p++rI
    KIAA0249   786 EKKPEKFKIECLNDIKNLFAPSKQPFYAAFGNRPNDVYAYTQVGVPDCRI 835  

                   FtInpkgevhqe<-*
                   Ft+npkge++qe   
    KIAA0249   836 FTVNPKGELIQE    847  

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