hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21301919/chunk_1/iprscan-20080501-21301919.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0248 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01369.11.ls Sec7 domain 394.5 1.4e-115 1 PF01369.11.fs Sec7 domain 392.6 5.4e-115 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01369.11.fs 1/1 717 905 .. 1 221 [] 392.6 5.4e-115 PF01369.11.ls 1/1 717 905 .. 1 221 [] 394.5 1.4e-115 Alignments of top-scoring domains: PF01369.11.fs: domain 1 of 1, from 717 to 905: score 392.6, E = 5.4e-115 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle +k++kk li+g+++FNqkPkkGi++L++kgll++++d++++A++L+ KIAA0248 717 IKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIPMDNTEVAQWLR- 762 eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks e+++LdKk+iGef++ d++ni++L++Fv+ +F+F+gl+LdeALRl+L++ KIAA0248 763 ENPRLDKKMIGEFVS--DRKNIDLLESFVS-TFSFQGLRLDEALRLYLEA 809 FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa FRLPGEa++I+R+leaF+er+++c N+++f+n+ D++ KIAA0248 810 FRLPGEAPVIQRLLEAFTERWMNC--NGSPFANS-------------DAC 844 yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg ++L+Y++IMLNTD+H N++V+k++++MTle+F++N++ g KIAA0248 845 FSLAYAVIMLNTDQH-NHNVRKQNAPMTLEEFRKNLK------------G 881 indGgDlprefLtelYesIkneei<-* +n+G+D+++++L+++Y++Ikneei KIAA0248 882 VNGGKDFEQDILEDMYHAIKNEEI 905 PF01369.11.ls: domain 1 of 1, from 717 to 905: score 394.5, E = 1.4e-115 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle +k++kk li+g+++FNqkPkkGi++L++kgll++++d++++A++L+ KIAA0248 717 IKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIPMDNTEVAQWLR- 762 eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks e+++LdKk+iGef++ d++ni++L++Fv+ +F+F+gl+LdeALRl+L++ KIAA0248 763 ENPRLDKKMIGEFVS--DRKNIDLLESFVS-TFSFQGLRLDEALRLYLEA 809 FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa FRLPGEa++I+R+leaF+er+++c N+++f+n+ D++ KIAA0248 810 FRLPGEAPVIQRLLEAFTERWMNC--NGSPFANS-------------DAC 844 yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg ++L+Y++IMLNTD+H N++V+k++++MTle+F++N++ g KIAA0248 845 FSLAYAVIMLNTDQH-NHNVRKQNAPMTLEEFRKNLK------------G 881 indGgDlprefLtelYesIkneei<-* +n+G+D+++++L+++Y++Ikneei KIAA0248 882 VNGGKDFEQDILEDMYHAIKNEEI 905 //