hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21284253/chunk_1/iprscan-20080501-21284253.nocrc
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Query sequence: KIAA0247
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00084.11.ls Sushi domain (SCR repeat)                       49.2    1.3e-11   1
PF00084.11.fs Sushi domain (SCR repeat)                       47.3    3.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00084.11.fs   1/1      43   103 ..     1    65 []    47.3  3.4e-11
PF00084.11.ls   1/1      43   103 ..     1    65 []    49.2  1.3e-11

Alignments of top-scoring domains:
PF00084.11.fs: domain 1 of 1, from 43 to 103: score 47.3, E = 3.4e-11
                   *->CplppPdieNGrvsss....kttyeypvGdtvtytCneGYrlvG.ss
                      Cp  pP++eNG ++ ++++ ++  +   G++++y C eGY+l+G+ +
    KIAA0247    43    CP-LPPEPENGGYICHprpcRDPLTA--GSVIEYLCAEGYMLKGdYK 86   

                   sitCtedggGgWsppllgelPkC<-*
                   ++tC  +  G+W p++   + +C   
    KIAA0247    87 YLTCK-N--GEWKPAM---EISC    103  

PF00084.11.ls: domain 1 of 1, from 43 to 103: score 49.2, E = 1.3e-11
                   *->CplppPdieNGrvsss....kttyeypvGdtvtytCneGYrlvG.ss
                      Cp  pP++eNG ++ ++++ ++  +   G++++y C eGY+l+G+ +
    KIAA0247    43    CP-LPPEPENGGYICHprpcRDPLTA--GSVIEYLCAEGYMLKGdYK 86   

                   sitCtedggGgWsppllgelPkC<-*
                   ++tC  +  G+W p++   + +C   
    KIAA0247    87 YLTCK-N--GEWKPAM---EISC    103  

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