hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21263467/chunk_1/iprscan-20080501-21263467.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0246 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00554 446.9 1e-129 7 SM00181 362.1 3.6e-104 23 SM00445 190.0 2.2e-52 1 SM00180 36.8 2.8e-06 4 SM00179 35.7 6.2e-06 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/23 130 167 .. 1 32 [] 19.8 0.39 SM00180 1/4 138 179 .. 1 42 [] 2.9 4.9 SM00181 2/23 178 212 .. 1 32 [] 15.8 6 SM00180 2/4 183 249 .. 1 42 [] 3.9 4.1 SM00181 3/23 217 250 .. 1 32 [] 12.0 22 SM00181 4/23 254 290 .. 1 32 [] 12.3 21 SM00181 5/23 294 337 .. 1 32 [] 6.1 73 SM00181 6/23 339 375 .. 1 32 [] 6.0 75 SM00554 1/7 417 517 .. 1 122 [] 3.0 2 SM00554 2/7 561 663 .. 1 122 [] 100.5 2e-25 SM00181 7/23 747 787 .. 1 32 [] 1.2 2e+02 SM00181 8/23 798 835 .. 1 32 [] 5.6 81 SM00179 1/6 840 879 .. 1 34 [] 3.9 0.55 SM00181 9/23 840 879 .. 1 32 [] 17.9 1.4 SM00179 2/6 882 922 .. 1 34 [] 8.5 0.15 SM00181 10/23 883 922 .. 1 32 [] 25.3 0.0086 SM00181 11/23 926 965 .. 1 32 [] 15.6 6.9 SM00181 12/23 969 1007 .. 1 32 [] 17.3 2.2 SM00554 3/7 1041 1140 .. 1 122 [] 83.9 1.9e-20 SM00554 4/7 1183 1275 .. 1 122 [] 10.7 0.43 SM00181 13/23 1350 1387 .. 1 32 [] 19.5 0.48 SM00179 3/6 1351 1387 .. 1 34 [] 4.0 0.54 SM00180 3/4 1359 1398 .. 1 42 [] 7.2 2.2 SM00181 14/23 1397 1431 .. 1 32 [] 18.2 1.1 SM00181 15/23 1438 1473 .. 1 32 [] 15.5 7.3 SM00179 4/6 1474 1515 .. 1 34 [] 8.4 0.15 SM00181 16/23 1477 1515 .. 1 32 [] 24.5 0.015 SM00179 5/6 1516 1558 .. 1 34 [] 9.1 0.13 SM00181 17/23 1519 1558 .. 1 32 [] 24.5 0.014 SM00181 18/23 1562 1601 .. 1 32 [] 9.1 40 SM00554 5/7 1634 1730 .. 1 122 [] 102.7 4.2e-26 SM00554 6/7 1781 1886 .. 1 122 [] 92.6 4.6e-23 SM00179 6/6 1986 2026 .. 1 34 [] 1.9 0.96 SM00181 19/23 1986 2026 .. 1 32 [] 22.4 0.064 SM00180 4/4 1987 2037 .. 1 42 [] 22.8 0.049 SM00181 20/23 2036 2070 .. 1 32 [] 16.9 2.9 SM00181 21/23 2078 2109 .. 1 32 [] 16.4 4.1 SM00181 22/23 2113 2150 .. 1 32 [] 18.2 1.2 SM00181 23/23 2154 2193 .. 1 32 [] 22.1 0.08 SM00445 1/1 2225 2320 .. 1 107 [] 190.0 2.2e-52 SM00554 7/7 2386 2481 .. 1 122 [] 53.5 2.8e-11 Alignments of top-scoring domains: SM00181: domain 1 of 23, from 130 to 167: score 19.8, E = 0.39 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* eC ++ ++pC + GtC+++ ++ tC C+ + ++g+ C+ KIAA0246 130 ECPggaetPCNGH-----GTCLdgmdrNGTCvCQ-ENFRGsACQ 167 SM00180: domain 1 of 4, from 138 to 179: score 2.9, E = 4.9 *->CdCnlpppvG.Cdp....tGqClnCkpnttGGrrCdderCapGyy.. +Cn +G+C + +++G C+ C++n G C +C++ + KIAA0246 138 -PCN---GHGtCLDgmdrNGTCV-CQENFRG-SACQ--ECQDPNRfg 176 .gC<-* ++C KIAA0246 177 pDC 179 SM00181: domain 2 of 23, from 178 to 212: score 15.8, E = 6 *->eCa...pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* +C++ C +G +C +++++ +C C +Gytg++C KIAA0246 178 DCQsvcSCVHG------VCNhgprgDGSClCF-AGYTGpHCD 212 SM00180: domain 2 of 4, from 183 to 249: score 3.9, E = 4.1 *->CdCnlpppvG.Cdp....tGqClnCkpnttGGrrCdde......... C C +G C+ +++++G Cl C ++tG ++Cd+e + ++ + KIAA0246 183 CSCV----HGvCNHgprgDGSCL-CFAGYTG-PHCDQElpvcqelrc 223 .............rCapGyy....gC<-* +++++ + + ++ rC+pGy +++++C KIAA0246 224 pqntqcsaeapscRCLPGYTqqgsEC 249 SM00181: domain 3 of 23, from 217 to 250: score 12.0, E = 22 *->eCa..pCsnGgtEqnGtCi..sytC.CpgpGytg...rCe<-* C++ C ++ +C + ++C+C pGyt +++ C KIAA0246 217 VCQelRCPQN-----TQCSaeAPSCrCL-PGYTQqgsECR 250 SM00181: domain 4 of 23, from 254 to 290: score 12.3, E = 21 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-* +C ++pCs ++C ++++ +C+Cp + y+g++ C KIAA0246 254 PCWpsPCSLL-----AQCSvspkgQAQChCP-ENYHGdgmVCL 290 SM00181: domain 5 of 23, from 294 to 337: score 6.1, E = 73 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg.......r +C ++ ++C + C+ +++ C+C+ pG +++ + KIAA0246 294 PCTdnlgGCPSNS----TLCVyqkpgQAFCtCR-PGLVSinsnasaG 335 Ce<-* C KIAA0246 336 CF 337 SM00181: domain 6 of 23, from 339 to 375: score 6.0, E = 75 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-* C++ C+ +tC+ + ++ +C C+ + g+++ C KIAA0246 339 FCSpfSCDRS-----ATCQvtadgKTSCvCR-ESEVGdgrACY 375 SM00554: domain 1 of 7, from 417 to 517: score 3.0, E = 2 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly Tv++P+ + F++ + + +ql + KIAA0246 417 TVLVPSVSSFSS-------------RTMNASL--------AQQLCRQ 442 Hvvpgrltsadlln..ggtlpTlaGsklrvnvsg...........gtvtv H+++g++ ++d ++++ ++ TlaG++++v+ + ++ + + +++ + t KIAA0246 443 HIIAGQHILEDTRTqqTRRWWTLAGQEITVTFNQftkysykykdqPQQTF 492 NgaagdsktgavtarvveaDiaatNGvvHvIDrVL.lPp<-* N + +a+ a NGv Hv+ ++ + p KIAA0246 493 N--------------IYKANNIAANGVFHVVTGLRwQAP 517 SM00554: domain 2 of 7, from 561 to 663: score 100.5, E = 2e-25 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly TvFaP++eA+++l++g l l +++ + kL++l++y KIAA0246 561 TVFAPSNEAVDSLRDGRL-------IYLFTAG-----LSKLQELVRY 595 Hvvp.grltsadllnggtlpTlaGsklrvnvsg...gtvtvNgaagdskt H+ ++g+lt + l ++g++ T+a++ l vn+s++++ + +g+ KIAA0246 596 HIYNhGQLTVEKLISKGRILTMANQVLAVNISEegrILLGPEGV------ 639 gavtarvveaDiaatNGvvHvIDrVLlPp<-* ++ + D++a NGv+H+ D++LlPp KIAA0246 640 -----PLQRVDVMAANGVIHMLDGILLPP 663 SM00181: domain 7 of 23, from 747 to 787: score 1.2, E = 2e+02 *->eCa........pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe +C + +++ ++pC G C ++ + C C p y+g C KIAA0246 747 DCTqcpggfsnPCYG-----KGNCSdgiqgNGAClCF-PDYKGiACH 787 <-* KIAA0246 - - SM00181: domain 8 of 23, from 798 to 835: score 5.6, E = 81 *->eCa...pCsnGgtEqnGtCi.....sytC....CpgpGytg.rCe<- C+++ +C +G C ++++++ C++++C+ pG++g+ C KIAA0246 798 QCQedcGCVHG------LCDnrpgsGGVCqqgtCA-PGFSGrFCN 835 * KIAA0246 - - SM00179: domain 1 of 6, from 840 to 879: score 3.9, E = 0.55 *->DiDEC.......pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe< +C++++ + C+ ++ +C+ ++G rC+C +G+++++ +C+ KIAA0246 840 ---DCgptglaqHCHLHA---RCVSqEGVARCrCLDGFEgdgFSCT 879 -* KIAA0246 - - SM00181: domain 9 of 23, from 840 to 879: score 17.9, E = 1.4 *->eCa......pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe< +C +++ + C+ + ++C++ ++ +C+C +G++g++ +C KIAA0246 840 DCGptglaqHCHLH-----ARCVsqegVARCrCL-DGFEGdgfSCT 879 -* KIAA0246 - - SM00179: domain 2 of 6, from 882 to 922: score 8.5, E = 0.15 *->DiDEC......pCqnGGptgtCiN..vGSYrC.CppGyt...rnCe< + C++++++ C+ ++ C+ ++ G +C+C+ G+++++r C+ KIAA0246 882 --NPCshpdrgGCSENA---ECVPgsLGTHHCtCHKGWSgdgRVCV 922 -* KIAA0246 - - SM00181: domain 10 of 23, from 883 to 922: score 25.3, E = 0.0086 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe< +C+++++++Cs++ ++C++++ ++++C+C+ G++g+++ C+ KIAA0246 883 PCShpdrgGCSEN-----AECVpgslgTHHCtCH-KGWSGdgrVCV 922 -* KIAA0246 - - SM00181: domain 11 of 23, from 926 to 965: score 15.6, E = 6.9 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe< eC+ + +++C+ + + C +++ +C+C+ G+ g++ +C KIAA0246 926 ECEldvrgGCHTD-----ALCSyvgpgQSRCtCK-LGFAGdgyQCS 965 -* KIAA0246 - - SM00181: domain 12 of 23, from 969 to 1007: score 17.3, E = 2.2 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +C ++++C+ +tC+ +++ C+Cp pG+ g++ +C KIAA0246 969 PCRagngGCHGL-----ATCRavgggQRVCtCP-PGFGGdgfSCY 1007 * KIAA0246 - - SM00554: domain 3 of 7, from 1041 to 1140: score 83.9, E = 1.9e-20 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly T ++P+ +A+ l p+++ +++ +p ++L +l++ KIAA0246 1041 TALVPSEAAVRQLSPEDR--------AFWLQP------RTLPNLVRA 1073 Hvvpgrltsadlln..ggtlpTla.GsklrvnvsggtvtvNgaagdsktg H+++g+l+ ++l +g+ + Tl++ ++++++ +g v+v +a KIAA0246 1074 HFLQGALFEEELARlgGQEVATLNpTTRWEIRNISGRVWVQNA------- 1116 avtarvveaDiaatNGvvHvIDrVLlPp<-* v aD+ atNGv+H+ ++VLlPp KIAA0246 1117 ----SVDVADLLATNGVLHILSQVLLPP 1140 SM00554: domain 4 of 7, from 1183 to 1275: score 10.7, E = 0.43 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly T+F+Pt+ +++ ns + d +++ KIAA0246 1183 TIFVPTNRSLEAQG-----------NSSHLDA----------DTVRH 1208 Hvvp.grltsadllnggtlpTlaGsklrvnvsg..gtvtvNgaagdsktg Hvv +++l+++ l++gg ++l G ++ ++++g+ vN + KIAA0246 1209 HVVLgEALSMETLRKGGHRNSLLGPAHWIVFYNhsGQPEVNHV------- 1251 avtarvveaDiaatNGvvHvIDrVLlPp<-* ++ + ++a + + ++VL KIAA0246 1252 ----PLEGPMLEAPGRSLIGLSGVLTVG 1275 SM00181: domain 13 of 23, from 1350 to 1387: score 19.5, E = 0.48 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* +C ++ ++ Cs + G+C+++ +s +C+C+ +G++g+ Ce KIAA0246 1350 PCPgglggVCSGH-----GQCQdrflgSGEChCH-EGFHGtACE 1387 SM00179: domain 3 of 6, from 1351 to 1387: score 4.0, E = 0.54 *->DiDEC......pCqnGGptgtCiN..vGSYrC.CppGyt.rnCe<-* C+++ +++C+ +G +C+++ GS +C+C++G++++ Ce KIAA0246 1351 ----CpgglggVCSGHG---QCQDrfLGSGEChCHEGFHgTACE 1387 SM00180: domain 3 of 4, from 1359 to 1398: score 7.2, E = 2.2 *->CdCnlpppvG.Cdp....tGqClnCkpnttGGrrCdderCapGyy.. C + G+C + ++G C+ C ++ G C+ C+ G y++ KIAA0246 1359 CSGH-----GqCQDrflgSGECH-CHEGFHG-TACE--VCELGRYgp 1396 gC<-* +C KIAA0246 1397 NC 1398 SM00181: domain 14 of 23, from 1397 to 1431: score 18.2, E = 1.1 *->eCa...pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* C + +C +G C+++ + +C C G++g rC KIAA0246 1397 NCTgvcDCAHG------LCQeglqgDGSCvCN-VGWQGlRCD 1431 SM00181: domain 15 of 23, from 1438 to 1473: score 15.5, E = 7.3 *->eCa.pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<-* C + C+++ + C+ ++ + tC C+ +Gy+g++ C KIAA0246 1438 QCPrKCDPN-----ANCVqdsagASTCaCA-AGYSGngiFCS 1473 SM00179: domain 4 of 6, from 1474 to 1515: score 8.4, E = 0.15 *->DiDEC.....pCqnGGptgtCiN..vGSYrC.CppGyt...rnCe<- +D C ++++ C++++ C+ +G +C+C++Gy++++ C+ KIAA0246 1474 EVDPCahghgGCSPHA---NCTKvaPGQRTCtCQDGYMgdgELCQ 1515 * KIAA0246 - - SM00181: domain 16 of 23, from 1477 to 1515: score 24.5, E = 0.015 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +Ca+++++Cs++ + C++ ++ tC+C+ +Gy+g+++ C+ KIAA0246 1477 PCAhghgGCSPH-----ANCTkvapgQRTCtCQ-DGYMGdgeLCQ 1515 * KIAA0246 - - SM00179: domain 5 of 6, from 1516 to 1558: score 9.1, E = 0.13 *->DiDEC.....pCqnGGptgtCiN..vGSYrC.CppGyt....rnCe< i+ C +++ C+ ++ Ci +++ +C+C++Gy++++ r+Ce KIAA0246 1516 EINSClihhgGCHIHA---ECIPtgPQQVSCsCREGYSgdgiRTCE 1558 -* KIAA0246 - - SM00181: domain 17 of 23, from 1519 to 1558: score 24.5, E = 0.014 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg....rCe< C+ ++++C+ + ++Ci++++ +C+C+ +Gy+g++ ++Ce KIAA0246 1519 SCLihhgGCHIH-----AECIptgpqQVSCsCR-EGYSGdgirTCE 1558 -* KIAA0246 - - SM00181: domain 18 of 23, from 1562 to 1601: score 9.1, E = 40 *->eCa....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe<- +C++++++Cs+ +tC +++++ tC+C ++ g++ +C KIAA0246 1562 PCSknngGCSPY-----ATCKstgdgQRTCtCDTAHTVGdglTCR 1601 * KIAA0246 - - SM00554: domain 5 of 7, from 1634 to 1730: score 102.7, E = 4.2e-26 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly T+F+P + +++l +++l +++ +++ + + +y KIAA0246 1634 TIFVPHADLMSNLSQDEL-------ARIRAHR---------QLVFRY 1664 Hvvp.grltsadllnggtlpTlaGsklrvnvsggtvtvNgaagdsktgav Hvv +rl s+dll +g ++l G++lr++ ++g++++N+ a KIAA0246 1665 HVVGcRRLRSEDLLEQGYATALSGHPLRFSEREGSIYLNDFA-------- 1706 tarvveaDiaatNGvvHvIDrVLlPp<-* rvv++D++a NG++H IDrVLlPp KIAA0246 1707 --RVVSSDHEAVNGILHFIDRVLLPP 1730 SM00554: domain 6 of 7, from 1781 to 1886: score 92.6, E = 4.6e-23 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly T ++Ptd+AF +lpp+ + ++l + +++ dkL ++L+ KIAA0246 1781 TMLWPTDAAFRALPPDRQ--------AWLYHEDHR---DKLAAILRG 1816 Hvvp.grltsadllnggtlpTlaGsklrvnvsg.....gtvtvNgaagds H++ + +++dl+n g+l T+ G ++++++s++++++ +v ++a KIAA0246 1817 HMIRnVEALASDLPNLGPLRTMHGTPISFSCSRtrpgeLMVGEDDA---- 1862 ktgavtarvveaDiaatNGvvHvIDrVLlPp<-* r+v++ ++ + G ++ID++L Pp KIAA0246 1863 -------RIVQRHLPFEGGLAYGIDQLLEPP 1886 SM00179: domain 6 of 6, from 1986 to 2026: score 1.9, E = 0.96 *->DiDEC.........pCqnGGptgtCiN..vGSYrC.CppGyt.rnCe EC+ ++++++pC+ G +C ++ GS +C C+ G+ ++ Ce KIAA0246 1986 ---ECqacpggpssPCSDRG---VCMDgmSGSGQClCRSGFAgTACE 2026 <-* KIAA0246 - - SM00181: domain 19 of 23, from 1986 to 2026: score 22.4, E = 0.064 *->eCa........pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe eC+ ++++++pCs G+C ++ ++s +C C+ G+ g+ Ce KIAA0246 1986 ECQacpggpssPCSDR-----GVCMdgmsgSGQClCR-SGFAGtACE 2026 <-* KIAA0246 - - SM00180: domain 4 of 4, from 1987 to 2037: score 22.8, E = 0.049 *->Cd.CnlpppvG...........Cdp....tGqClnCkpnttGGrrCd C+ C+ G+++++ ++++ C + +++GqCl C+ + +G C+ KIAA0246 1987 CQaCP-----GgpsspcsdrgvCMDgmsgSGQCL-CRSGFAG-TACE 2026 derCapGyy..gC<-* CapG ++++C KIAA0246 2027 --LCAPGAFgpHC 2037 SM00181: domain 20 of 23, from 2036 to 2070: score 16.9, E = 2.9 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-* C+ C + G+C ++ ++s +C C +G+tg+rCe KIAA0246 2036 HCQacRCTVH-----GRCDeglggSGSCfCD-EGWTGpRCE 2070 SM00181: domain 21 of 23, from 2078 to 2109: score 16.4, E = 4.1 *->eCa.pCsnGgtEqnGtCi.sytC.CpgpGytg...rCe<-* C +pC + ++C+ + +C+C Gy+g+++ C KIAA0246 2078 VCTpPCAPE-----AVCRaGNSCeCS-LGYEGdgrVCT 2109 SM00181: domain 22 of 23, from 2113 to 2150: score 18.2, E = 1.2 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* C++++++Cs++ + C ++ tC+C p y+g++ +C KIAA0246 2113 LCQdghgGCSEH-----ANCSqvgtMVTCtCL-PDYEGdgwSCR 2150 SM00181: domain 23 of 23, from 2154 to 2193: score 22.1, E = 0.08 *->eCa.....pCsnGgtEqnGtCi.....sytC.CpgpGytg...rCe< +C ++++++Cs++ + C++++ ++ +C+C+ +Gy g++ +C KIAA0246 2154 PCTdghrgGCSEH-----ANCLstglnTRRCeCH-AGYVGdglQCL 2193 -* KIAA0246 - - SM00445: domain 1 of 1, from 2225 to 2320: score 190.0, E = 2.2e-52 *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF ++gVFhl+a++G+y+L+F+EA++aCeaqGA+LA+++QL+aA+++ GF KIAA0246 2225 RAGVFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQL-GF 2270 dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd + C +GWLa+Gs+++P+v+P ++CG+ g++G+++ +G ++++ KIAA0246 2271 HLCLMGWLANGSTAHPVVFPVADCGN---GRVGIVS-------LGARKNL 2310 serYDAYCFr<-* ser+DAYCFr KIAA0246 2311 SERWDAYCFR 2320 SM00554: domain 7 of 7, from 2386 to 2481: score 53.5, E = 2.8e-11 *->TvFaPtdeAFkklppgtlakPtkqensllddpksvFAkdkLkqlLly T+F+P++e F + +++ + L+ KIAA0246 2386 TLFVPVNEGFVD--------------NMTLSG----------PDLEL 2408 HvvpgrltsadllnggtlpTlaGsklrvnvsg...........gtvtvNg H+ + +l+sa g+ lp+ G l ++ g+++++ + +gtv+v KIAA0246 2409 HASNATLLSANASQGKLLPAHSGLSLIISDAGpdnsswapvapGTVVVS- 2457 aagdsktgavtarvveaDiaatNGvvHvIDrVLlPp<-* r++ +Di+a NG++H +Ll p KIAA0246 2458 ------------RIIVWDIMAFNGIIHALASPLLAP 2481 //