hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21224192/chunk_1/iprscan-20080501-21224192.nocrc
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Query sequence: KIAA0245
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00324.11.ls Amino acid permease                         -10.8    1.8e-05   1
PF00324.11.fs Amino acid permease                          15.9    0.00044   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00324.11.fs   1/1      86   390 ..     1   364 [.    15.9  0.00044
PF00324.11.ls   1/1      86   519 ..     1   527 []   -10.8  1.8e-05

Alignments of top-scoring domains:
PF00324.11.fs: domain 1 of 1, from 86 to 390: score 15.9, E = 0.00044
                   *->HvqmialGgviGtGLfvg.sgvvlaqaGpaglpllgyliagvviflv
                        +    G++iG G+fv++ gv +++a  +   l++++i+g++++  
    KIAA0245    86    NGVSLVVGNMIGSGIFVSpKGVLVHTASYGMS-LIVWAIGGLFSVVG 131  

                   mlslgEmstngpvvsGsfytyasrflgpslGfatGwnylltvYwfswvfv
                   +l+++E+ t +  +sG+ y+y+     +++G++++ +        +wv +
    KIAA0245   132 ALCYAELGTTIT-KSGASYAYIL----EAFGGFIAFI-------RLWVSL 169  

                   iale.ltaasiliqfwesfpdipylwvwgsivdSgpnd.iRvIgavfivv
                   + +e+ ++a i i+f++++ + +     ++  d +p++  R ++a  i++
    KIAA0245   170 LVVEpTGQAIIAITFANYIIQPS-----FPSCD-PPYLaCRLLAAACICL 213  

                   lliinlvgvKgygeaEfwfalikviaiigfiivgavviillfgggpndgl
                   l+++n + vK+    +  f   kv+a+i+ i+ g    + l++g+  ++ 
    KIAA0245   214 LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMG---LVKLCQGHSEHF- 259  

                   lfhaigfrylgdpgaifknnfppgfapspgtgsFlgflsvfviaaFaFtG
                                    ++ f ++      +   ++   ++  a F+++G
    KIAA0245   260 -----------------QDAFEGS------SWDMGNLSLALYSALFSYSG 286  

                   ielvgiaAgEsknPrKaiPkAilqvvwritifYilsllaigllvpwndpg
                         + +E+knP++++P+Ai   + ++t++Yil+ +a+  ++  +d+ 
    KIAA0245   287 WDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVL 336  

                   lladsasaFFdCkpdcsaSPfviafknlgikglahlinaviLtaaLSaan
                      ++a+                 f       +   i +++  ++++ +n
    KIAA0245   337 SSDAVAVT----------------FADQTFGMFSWTIPIAVALSCFGGLN 370  

                   sslysgsRmlyaLArdglaP<-*
                   +s++++sR ++  +r+g++P   
    KIAA0245   371 ASIFASSRLFFVGSREGHLP    390  

PF00324.11.ls: domain 1 of 1, from 86 to 519: score -10.8, E = 1.8e-05
                   *->HvqmialGgviGtGLfvg.sgvvlaqaGpaglpllgyliagvviflv
                        +    G++iG G+fv++ gv +++a  +   l++++i+g++++  
    KIAA0245    86    NGVSLVVGNMIGSGIFVSpKGVLVHTASYGMS-LIVWAIGGLFSVVG 131  

                   mlslgEmstngpvvsGsfytyasrflgpslGfatGwnylltvYwfswvfv
                   +l+++E+ t +  +sG+ y+y+     +++G++++ +        +wv +
    KIAA0245   132 ALCYAELGTTIT-KSGASYAYIL----EAFGGFIAFI-------RLWVSL 169  

                   iale.ltaasiliqfwesfpdipylwvwgsivdSgpnd.iRvIgavfivv
                   + +e+ ++a i i+f++++ + +     ++  d +p++  R ++a  i++
    KIAA0245   170 LVVEpTGQAIIAITFANYIIQPS-----FPSCD-PPYLaCRLLAAACICL 213  

                   lliinlvgvKgygeaEfwfalikviaiigfiivgavviillfgggpndgl
                   l+++n + vK+    +  f   kv+a+i+ i+ g    + l++g+  ++ 
    KIAA0245   214 LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMG---LVKLCQGHSEHF- 259  

                   lfhaigfrylgdpgaifknnfppgfapspgtgsFlgflsvfviaaFaFtG
                                    ++ f ++      +   ++   ++  a F+++G
    KIAA0245   260 -----------------QDAFEGS------SWDMGNLSLALYSALFSYSG 286  

                   ielvgiaAgEsknPrKaiPkAilqvvwritifYilsllaigllvpwndpg
                         + +E+knP++++P+Ai   + ++t++Yil+ +a+  ++  +d+ 
    KIAA0245   287 WDTLNFVTEEIKNPERNLPLAIGISMPIVTLIYILTNVAYYTVLNISDVL 336  

                   lladsasaFFdCkpdcsaSPfviafknlgikglahlinaviLtaaLSaan
                      ++a+                 f       +   i +++  ++++ +n
    KIAA0245   337 SSDAVAVT----------------FADQTFGMFSWTIPIAVALSCFGGLN 370  

                   sslysgsRmlyaLArdglaPikkflkkvdksgvPlraillstaisllava
                   +s++++sR ++  +r+g++P +   + +  +  P++a+l+ +  +l+ + 
    KIAA0245   371 ASIFASSRLFFVGSREGHLP-DLLSMIHIERFTPIPALLFNCTMALIYL- 418  

                   vlw.liillaslnpaapivfnfllaisgliglivwllislshlrfRkafk
                   +  + + l+++++++    + f++ +s +++l         +lr++  ++
    KIAA0245   419 IVEdVFQLINYFSFS----YWFFVGLSVVGQL---------YLRWKEPKR 455  

                   yqgrsidelpfkaplgpfgvilalaaliiilliqayyaflpvpkgpktwg
                    +  ++      + ++p  ++++  +l+i+ l+     +l+         
    KIAA0245   456 PRPLKL------SVFFPIVFCICSVFLVIVPLFTDTINSLI--------- 490  

                   aadfaalyltvllfii..lligyklhvknkkpqvlk<-*
                           +++ l +++ ++ g++l  +++ +++ +   
    KIAA0245   491 -------GIGIALSGVpfYFMGVYLPESRRPLFIRN    519  

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