# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha07016.fasta.huge -Q ../query/KIAA0245.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0245, 552 aa
 vs ./tmplib.23147 library

1986953 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.3911+/-0.00471; mu= 16.2538+/- 0.321
 mean_var=87.1150+/-19.737, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.137413

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1613  ( 686 res)   fj12845                     ( 686)  169 44.0 4.5e-05


>>KIAA1613  ( 686 res)   fj12845                          (686 aa)
 initn: 149 init1:  73 opt: 169  Z-score: 182.9  bits: 44.0 E(): 4.5e-05
Smith-Waterman score: 234;  21.083% identity (54.131% similar) in 351 aa overlap (118-451:10-354)

        90       100       110       120       130       140       
KIAA02 VSLVVGNMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKS-G
                                     .. . :... :.....::::.:. . :. :
KIAA16                      AKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTG
                                    10        20        30         

        150       160          170       180          190          
KIAA02 ASYAYILEAFGGFIAFIRLW---VSLLVVEPTGQAIIAITF---ANYIIQ----------
       ..:.:   . : :.::.  :   .  :.   .: . ..  :   ::. :.          
KIAA16 SAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMADSVGTL
      40        50        60        70        80        90         

              200       210       220       230       240       250
KIAA02 PSFPSCDPPYLACRLLAAACICLLTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVK
        .. . .  :    :::     ..:..    :: .   .....  .... . :.. ::  
KIAA16 NGLGKGEESYPD--LLALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMIAGLFF
     100       110         120       130       140       150       

              260       270       280       290       300       310
KIAA02 LCQGHSEHFQDAFEGSSWDMGNLSLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGI
       .   .  . :  :   .:. : :. :  . .... :.: .  . :: :::. ..: ::  
KIAA16 INGKYWAEGQ--FLPHGWS-GVLQGAA-TCFYAFIGFDIIATTGEEAKNPNTSIPYAITA
       160         170        180        190       200       210   

              320       330       340       350       360       370
KIAA02 SMPIVTLIYILTNVAYYTVLNISDVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLN
       :. :    :. ..:    ..    . . . .   :. . :   .... :. . .   .: 
KIAA16 SLVICLTAYVSVSVILTLMVPYYTIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLL
           220       230       240       250       260       270   

              380       390       400       410       420       430
KIAA02 ASIFASSRLFFVGSREGHLPDLLSMIHIERFTPIPALLFNCTMALIYLIVEDVFQLINYF
       .:.:   :.... . .: :  .:. .     ::. : . .  .: .  .. .. .::...
KIAA16 GSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLALLVSLRDLIEMM
           280       290       300       310       320       330   

              440       450       460       470       480       490
KIAA02 SFSYWFFVGLSVVGQLYLRWKEPKRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLI
       :..  .   :  :  : ::..                                       
KIAA16 SIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEACSPVSEGD
           340       350       360       370       380       390   




552 residues in 1 query   sequences
1986953 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:09 2008 done: Thu Dec 18 15:13:09 2008
 Total Scan time:  0.470 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]