hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21205812/chunk_1/iprscan-20080501-21205812.nocrc
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Query sequence: KIAA0244
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07500.4.ls Transcription factor S-II (TFIIS), central d   182.8    7.7e-52   1
PF07500.4.fs Transcription factor S-II (TFIIS), central d   180.9    2.8e-51   1
PF07744.3.ls SPOC domain                                    156.3    7.5e-44   1
PF07744.3.fs SPOC domain                                    154.4    2.7e-43   1
PF00628.19.fs PHD-finger                                      52.5    1.9e-16   1
PF00628.19.ls PHD-finger                                      54.5    3.3e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/1     724   777 ..     1    51 []    52.5  1.9e-16
PF00628.19.ls   1/1     724   777 ..     1    51 []    54.5  3.3e-13
PF07500.4.fs   1/1     932  1045 ..     1   133 []   180.9  2.8e-51
PF07500.4.ls   1/1     932  1045 ..     1   133 []   182.8  7.7e-52
PF07744.3.fs   1/1    1214  1320 ..     1   131 []   154.4  2.7e-43
PF07744.3.ls   1/1    1214  1320 ..     1   131 []   156.3  7.5e-44

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 1, from 724 to 777: score 52.5, E = 1.9e-16
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                       C++C+k  ++   ++++C  Cd+wfH++C+g++l+ ++++++++++
    KIAA0244   724    QCGFCKK--PHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGeedke 768  

                   WyCpeCkpk<-*
                   ++C +C ++   
    KIAA0244   769 YVCVKCCAE    777  

PF00628.19.ls: domain 1 of 1, from 724 to 777: score 54.5, E = 3.3e-13
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                       C++C+k  ++   ++++C  Cd+wfH++C+g++l+ ++++++++++
    KIAA0244   724    QCGFCKK--PHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGeedke 768  

                   WyCpeCkpk<-*
                   ++C +C ++   
    KIAA0244   769 YVCVKCCAE    777  

PF07500.4.fs: domain 1 of 1, from 932 to 1045: score 180.9, E = 2.8e-51
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++svR++++++L+++L++++ ++p +               +++k+
    KIAA0244   932    IRQSVRHSLKDILMKRLTDSNLKVPEE---------------KAAKV 963  

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+elf+  f   ++td+kYKnkyRS++fNLkD+kN  L++kVl Ge
    KIAA0244   964 ATKIEKELFS-FF---RDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGE 1009 

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   +tP++L++M+peE+AS+eL+ +r++++++ ++++++   
    KIAA0244  1010 VTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEK    1045 

PF07500.4.ls: domain 1 of 1, from 932 to 1045: score 182.8, E = 7.7e-52
                   *->tgdsvRdKcrelLddaLvkdsdespkgemesvrntldeVtAcdpekl
                      +++svR++++++L+++L++++ ++p +               +++k+
    KIAA0244   932    IRQSVRHSLKDILMKRLTDSNLKVPEE---------------KAAKV 963  

                   AveIEeelfkClfveagttdkkYKnkyRSiifNLkDkkNpdLrrkVlnGe
                   A +IE+elf+  f   ++td+kYKnkyRS++fNLkD+kN  L++kVl Ge
    KIAA0244   964 ATKIEKELFS-FF---RDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGE 1009 

                   ItPerLatMtpeEmASdeLkkerekitkealrehql<-*
                   +tP++L++M+peE+AS+eL+ +r++++++ ++++++   
    KIAA0244  1010 VTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEK    1045 

PF07744.3.fs: domain 1 of 1, from 1214 to 1320: score 154.4, E = 2.7e-43
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG++++ sva+f++ka++vsG      ++ +l+++LPd     +++
    KIAA0244  1214    WKGFINMPSVAKFVTKAYPVSG------SPEYLTEDLPD-----SIQ 1249 

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   ++gR+++++v++y+ k++ s tk  e++vv+f+P +e       ed+ ++
    KIAA0244  1250 VGGRISPQTVWDYVEKIKASGTK--EICVVRFTPVTE-------EDQISY 1290 

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                   ++l+ Y++s++r+Gv++++++    +++d+y++P   
    KIAA0244  1291 TLLFAYFSSRKRYGVAANNMK----QVKDMYLIP    1320 

PF07744.3.ls: domain 1 of 1, from 1214 to 1320: score 156.3, E = 7.5e-44
                   *->WkGlLalksvadfpikahfvsGdilKeidekvldklLPdedtgpqlr
                      WkG++++ sva+f++ka++vsG      ++ +l+++LPd     +++
    KIAA0244  1214    WKGFINMPSVAKFVTKAYPVSG------SPEYLTEDLPD-----SIQ 1249 

                   itgRlrldqvkkylvklrisvtkPNevavvlflPssedisdvssedtnll
                   ++gR+++++v++y+ k++ s tk  e++vv+f+P +e       ed+ ++
    KIAA0244  1250 VGGRISPQTVWDYVEKIKASGTK--EICVVRFTPVTE-------EDQISY 1290 

                   relvsYLksKqraGvislpergskqngrdlyifP<-*
                   ++l+ Y++s++r+Gv++++++    +++d+y++P   
    KIAA0244  1291 TLLFAYFSSRKRYGVAANNMK----QVKDMYLIP    1320 

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