# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha04644s1.fasta.huge -Q ../query/KIAA0244.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0244, 2044 aa vs ./tmplib.23147 library 1985461 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.3150+/-0.00848; mu= -11.1795+/- 0.567 mean_var=460.4274+/-115.296, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.059771 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 42, opt: 30, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0333 ( 1223 res) pf04993 (1223) 644 71.6 1.4e-12 >>KIAA0333 ( 1223 res) pf04993 (1223 aa) initn: 1390 init1: 636 opt: 644 Z-score: 317.8 bits: 71.6 E(): 1.4e-12 Smith-Waterman score: 1068; 37.793% identity (59.030% similar) in 598 aa overlap (867-1338:629-1215) 840 850 860 870 880 890 KIAA02 RESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKS-EKIPKESTTVTCTGEKA : : :. .: . ... . .. : KIAA03 NLVPKKSSFANVAAATPAIKKPPSGFKGTIPKRPWLSATPSSGASAARQAGPAPAAATAA 600 610 620 630 640 650 900 910 920 930 940 KIAA02 SK--PGTHEKQEMKKKKVEKGVLNVHPA--------ASASKPSADQIRQSVRHSLKDILM :: ::. .: : .: . :: :. :.:.. ::::..:.:::.:: KIAA03 SKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAMSAAPSQPNS-QIRQNIRRSLKEILW 660 670 680 690 700 710 950 960 970 980 990 1000 KIAA02 KRLTDSN-LKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKK ::..::. : . :....:.: .::::.:..:. :: .::.::::.:::::::::. ::.. KIAA03 KRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHR 720 730 740 750 760 770 1010 1020 1030 1040 1050 1060 KIAA02 VLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEI ::. :.. .:.:..::::.::::..:..: : ..: : . : .. : ... KIAA03 VLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKLHNESKK---TAPRQEAIP 780 790 800 810 820 830 1070 1080 1090 1100 1110 1120 KIAA02 EIESDAPMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEV-DSMSKDTTSQHRQHLFDLNC ..:.. :....: : :: : ... :: : .: .:: :::::::: ::::::: KIAA03 DLEDSPPVSDSE---EQQESA--RAV--PEKSTAPLLDVFSSMLKDTTSQHRAHLFDLNC 840 850 860 870 880 1130 1140 1150 1160 KIAA02 KICIGRMAPPVDDLSPKKVKVVVGVAR-----KHS--------DNEAESIADAL------ ::: :.. :. .::: :. ..: . ::. :. : . .:. KIAA03 KICTGQVPSAEDEPAPKKQKLSASVKKEDLKSKHDSSAPDPAPDSADEVMPEAVPEVASE 890 900 910 920 930 940 KIAA02 -----------------------------------------------------------S : KIAA03 PGLESASHPNVDRTYFPGPPGDGHPEPSPLEDLSPCPASCGSGVVTTVTVSGRDPRTAPS 950 960 970 980 990 1000 1170 1180 1190 KIAA02 STSNILASE-------FFEEEKQESPKSTF---------------SPAPR----PEMPGT :. . .:: . : .:. :: .. :: :: : :. KIAA03 SSCTAVASAASRPDSTHMVEARQDVPKPVLTSVMVPKSILAKPSSSPDPRYLSVPPSPNI 1010 1020 1030 1040 1050 1060 1200 1210 1220 1230 1240 1250 KIAA02 VEVEST---------FLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQV :: ::.::. :::::::: :::::::::::::: .::.:::::.:.. KIAA03 STSESRSPPEGDTTLFLSRLSTIWKGFINMQSVAKFVTKAYPVSGCFDYLSEDLPDTIHI 1070 1080 1090 1100 1110 1120 1260 1270 1280 1290 1300 1310 KIAA02 GGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNM ::::.:.:::::: :.:.: .::.:..:: :.:::....: :..::::: :.::.::: KIAA03 GGRIAPKTVWDYVGKLKSSVSKELCLIRFHPATEEEEVAYISLYSYFSSRGRFGVVANNN 1130 1140 1150 1160 1170 1180 1320 1330 1340 1350 1360 1370 KIAA02 KQVKDMYLIPLGATDKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSACASTSHIA ..:::.:::::.: : .: :.::.::: KIAA03 RHVKDLYLIPLSAQDPVPSKLLPFEGPGKRRLSGWR 1190 1200 1210 1220 2044 residues in 1 query sequences 1985461 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:06 2008 done: Thu Dec 18 15:13:07 2008 Total Scan time: 0.980 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]