hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21125147/chunk_1/iprscan-20080501-21125147.nocrc
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Query sequence: KIAA0239
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  79.2      5e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2     260   306 ..     1    39 []    50.4  2.4e-10
SM00249    2/2     369   424 ..     1    39 []    28.8  0.00073

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 260 to 306: score 50.4, E = 2.4e-10
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C++++H+ C+g+ +  p+g+w+C  
    KIAA0239   260    VCdVCRSpegedgNeMVFCD-KCNVCVHQaCYGILKV-PTGsWLCRT 304  

                   Ck<-*
                   C    
    KIAA0239   305 CA    306  

SM00249: domain 2 of 2, from 369 to 424: score 28.8, E = 0.00073
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                       C++C++ +g+++qC+ ++C  ++Hv+C+   +++ ++   +++e++
    KIAA0239   369    SCsLCKEctGtCIQCSmPSCVIAFHVtCAFDHGLemrtiladndEVK 415  

                   g.wyCprCk<-*
                   ++ +C +++   
    KIAA0239   416 FkSFCQEHS    424  

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