hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21125147/chunk_1/iprscan-20080501-21125147.nocrc
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Query sequence: KIAA0239
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00628.19.fs PHD-finger                                      62.0    1.8e-19   2
PF00628.19.ls PHD-finger                                      58.9    1.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/2     260   308 ..     1    51 []    57.0  7.1e-18
PF00628.19.ls   1/1     260   308 ..     1    51 []    58.9  1.5e-14

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 2, from 260 to 308: score 57.0, E = 7.1e-18
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C+vC++++ ++g+++++CD+C++++H+aC+g+   p++   W+C+ 
    KIAA0239   260    VCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGS--WLCRT 304  

                   Ckpk<-*
                   C  +   
    KIAA0239   305 CALG    308  

PF00628.19.ls: domain 1 of 1, from 260 to 308: score 58.9, E = 1.5e-14
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C+vC++++ ++g+++++CD+C++++H+aC+g+   p++   W+C+ 
    KIAA0239   260    VCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGS--WLCRT 304  

                   Ckpk<-*
                   C  +   
    KIAA0239   305 CALG    308  

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