hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-21042939/chunk_1/iprscan-20080501-21042939.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0234 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00558 224.7 8e-63 1 SM00249 105.5 6.1e-27 2 SM00545 94.9 9.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00545 1/1 43 84 .. 1 45 [] 94.9 9.7e-24 SM00249 1/2 289 335 .. 1 39 [] 62.2 6.6e-14 SM00558 1/1 431 597 .. 1 214 [] 224.7 8e-63 SM00249 2/2 1147 1208 .. 1 39 [] 43.3 3.2e-08 Alignments of top-scoring domains: SM00545: domain 1 of 1, from 43 to 84: score 94.9, E = 9.7e-24 *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<- e+Pvf+P+++EF+Dpl+YI+kIrp +Aek+GI+K+ PP++W+P KIAA0234 43 ECPVFEPSWAEFQDPLGYIAKIRP---IAEKSGICKIRPPADWQP 84 * KIAA0234 - - SM00249: domain 1 of 2, from 289 to 335: score 62.2, E = 6.6e-14 *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC +C+vC +++++++ll+Cd gCd+ yH+ Cl ppl+++p+g w+Cp+C KIAA0234 289 ICqVCSRgdedDkLLFCD-GCDDNYHIfCLLPPLPeIPRGiWRCPKC 334 k<-* KIAA0234 335 I 335 SM00558: domain 1 of 1, from 431 to 597: score 224.7, E = 8e-63 *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv +y++ wnl+ +P ++ +++l +++ di+g+ v KIAA0234 431 EYATSGWNLNVMP----------VLDQSVLCHIN-----ADISGMKV 462 gkPkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrWyli p+ly+Gm +s ++wHi+d+++yS+Nylh+g++ K+Wy++ KIAA0234 463 ------PWLYVGMV---FSAFCWHIEDHWSYSINYLHWGEP---KTWYGV 500 Ppedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevlkkr P ae le+++k++ p+lf +qpdll++l+t+++p l + KIAA0234 501 PSLAAEHLEEVMKML--------TPELFDSQPDLLHQLVTLMNPNTLMSH 542 lkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNF + vpv r++Q++Gefv+++p++yH++fn G +n+a+avNF KIAA0234 543 G-----------VPVVRTNQCAGEFVITFPRAYHSGFNQG-YNFAEAVNF 580 aspewlpmglrlveelr<-* ++ +wlp g +++e++r KIAA0234 581 CTADWLPAGRQCIEHYR 597 SM00249: domain 2 of 2, from 1147 to 1208: score 43.3, E = 3.2e-08 *->yCvCgk....g.llqCdkgCdrwyHv.Clgpple............. +CvCg+ + + + lqCd C++w+H +C++ p + ++++++ ++++ KIAA0234 1147 ICVCGQvpagVgVLQCD-LCQDWFHGqCVSVPHLltspkpsltsspl 1192 ....epdg.wyCprCk<-* e d +++Cp C KIAA0234 1193 lawwEWDTkFLCPLCM 1208 //