# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02764.fasta.huge -Q ../query/KIAA0234.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0234, 1512 aa vs ./tmplib.23147 library 1985993 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2291+/-0.00579; mu= 12.4427+/- 0.391 mean_var=136.1256+/-33.482, 0's: 0 Z-trim: 14 B-trim: 0 in 0/40 Lambda= 0.109927 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0677 ( 1073 res) hk02635 (1073) 453 84.4 1.3e-16 KIAA0780 ( 1100 res) hk05362 (1100) 440 82.4 5.4e-16 KIAA0876 ( 1119 res) hh03683 (1119) 434 81.4 1e-15 KIAA1542 ( 1654 res) hh03408 (1654) 243 51.3 1.8e-06 KIAA1476 ( 2142 res) fj04778s1 (2142) 223 48.3 1.9e-05 KIAA0314 ( 1899 res) af02425 (1899) 218 47.4 3.1e-05 KIAA1696 ( 635 res) fj12768 ( 635) 208 45.3 4.4e-05 KIAA1506 ( 3309 res) ff04330 (3309) 211 46.6 9.8e-05 KIAA0383 ( 1781 res) hh00708s1 (1781) 197 44.1 0.0003 KIAA0783 ( 899 res) hk05408 ( 899) 168 39.2 0.0045 >>KIAA0677 ( 1073 res) hk02635 (1073 aa) initn: 497 init1: 450 opt: 453 Z-score: 390.3 bits: 84.4 E(): 1.3e-16 Smith-Waterman score: 455; 33.610% identity (63.071% similar) in 241 aa overlap (353-593:99-313) 330 340 350 360 370 380 KIAA02 EIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFNMPVHMVPTE . .... : ..:.: : . : . : KIAA06 DDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANS---DKYCTPRYSEFEE 70 80 90 100 110 120 390 400 410 420 430 440 KIAA02 LVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQNLSPEEKEYATSGWNLNVM : :...:. .. . . ::::... . ::. .. ::.. . KIAA06 L-ERKYWK---NLTFNPPI-YGADVNGTLY----------------EKH--VDEWNIGRL 130 140 150 160 450 460 470 480 490 500 KIAA02 PVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPS .. . : . . : :...:.:: :: ..: :: :: :::::::.::::.::.:: KIAA06 RTILDLVEKESGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPP 170 180 190 200 210 220 510 520 530 540 550 560 KIAA02 LAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPR ...::.. : . : .: .:.. .::..: : ..:.: ...: ::::.:::: KIAA06 EHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPY 230 240 250 260 270 280 570 580 590 600 610 620 KIAA02 AYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAAFPETLD .::.:::.:.: ::..:: : :. :.: . KIAA06 GYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERYKLWK 290 300 310 320 330 340 630 640 650 660 670 680 KIAA02 LNLAVAVHKEMFIMVQEERRLRKALLEKGVTEAEREAFELLPDDERQCIKCKTTCFLSAL KIAA06 AGKDNTVIDHTLPTPEAAEFLKESELPPRAGNEEECPEEDMEGVEDGEEGDLKTSLAKHR 350 360 370 380 390 400 >>KIAA0780 ( 1100 res) hk05362 (1100 aa) initn: 440 init1: 440 opt: 440 Z-score: 379.1 bits: 82.4 E(): 5.4e-16 Smith-Waterman score: 455; 33.193% identity (63.866% similar) in 238 aa overlap (353-590:145-356) 330 340 350 360 370 380 KIAA02 EIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFNMPVHMVPTE . .... : ..:.: : . : .. : KIAA07 DDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGK---YCTPRYL-DYE 120 130 140 150 160 170 390 400 410 420 430 440 KIAA02 LVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQNLSPEEKEYATSGWNLNVM .:...:. .. . :::::... . : :. . : .:. KIAA07 DLERKYWKNLTFVAPI----YGADINGSIYDEGVD-------------EWNIARLN-TVL 180 190 200 210 450 460 470 480 490 500 KIAA02 PVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPS :... : :. : :...:.:: :: ..: :: :: :::::::.::::.::..: KIAA07 DVVEEE--CGIS--IEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPP 220 230 240 250 260 510 520 530 540 550 560 KIAA02 LAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPR ...::.. . . : .. .:.. .::..:..: ..:.: . .: ::::.:::: KIAA07 EHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPY 270 280 290 300 310 320 570 580 590 600 610 620 KIAA02 AYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAAFPETLD .::.:::.:.: ::..:: :. :. :. KIAA07 GYHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWK 330 340 350 360 370 380 >>KIAA0876 ( 1119 res) hh03683 (1119 aa) initn: 465 init1: 430 opt: 434 Z-score: 373.8 bits: 81.4 E(): 1e-15 Smith-Waterman score: 452; 33.871% identity (61.694% similar) in 248 aa overlap (348-592:106-330) 320 330 340 350 360 370 KIAA02 LPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFNMPVH : : . . . .. ::. .:. . : : KIAA08 EWKPRQTYDDIDDVVIPAPIQQVVTGQSGLFTQYNIQKKAMTVGEYRRLANSEKYCTPRH 80 90 100 110 120 130 380 390 400 410 420 430 KIAA02 MVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSKQNLSPEEKEYATSGW . .: :...:. .. :. ::::: :: .: .. .. : KIAA08 QDFDDL-ERKYWKNLTF----VSPIYGADI------SG--------SLYDDD----VAQW 140 150 160 170 440 450 460 470 480 490 KIAA02 NLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTW :.. . .. . : . .. : :...:.:: :: ..: :: :: :::::::.::::.: KIAA08 NIGSLRTILDMVERECGTIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSW 180 190 200 210 220 230 500 510 520 530 540 550 KIAA02 YGVPSLAAEHLEEVMKMLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFV :..: ...::.. . : .. .:.. .::..: : ..:.: : .: ::::. KIAA08 YAIPPEHGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEFM 240 250 260 270 280 290 560 570 580 590 600 610 KIAA02 ITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGR---QCIEHYRRLRRYCVFSHEELICKM :::: .::.:::.:.: ::..:: : :. :. :: KIAA08 ITFPYGYHAGFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDMVKISMDVFVRILQPER 300 310 320 330 340 350 620 630 640 650 660 670 KIAA02 AAFPETLDLNLAVAVHKEMFIMVQEERRLRKALLEKGVTEAEREAFELLPDDERQCIKCK KIAA08 YELWKQGKDLTVLDHTRPTALTSPELSSWSASRASLKAKLLRRSHRKRSQPKKPKPEDPK 360 370 380 390 400 410 >>KIAA1542 ( 1654 res) hh03408 (1654 aa) initn: 259 init1: 221 opt: 243 Z-score: 208.0 bits: 51.3 E(): 1.8e-06 Smith-Waterman score: 243; 45.161% identity (77.419% similar) in 62 aa overlap (273-334:174-235) 250 260 270 280 290 300 KIAA02 TVKDEQSGGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKL . ......: . : .:.::.:.:..:.: KIAA15 SKNANSCPVDRTLFKCICIRAQFGGKILKKIPVENTKASEEEEDPTFCEVCGRSDREDRL 150 160 170 180 190 200 310 320 330 340 350 360 KIAA02 LFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGE :.::::: .::. :: ::: :.: : ::.: KIAA15 LLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVP 210 220 230 240 250 260 370 380 390 400 410 420 KIAA02 MADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVSNSK KIAA15 TTSRLRPRAGRTRAIARTRQSERVRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVAT 270 280 290 300 310 320 >>KIAA1476 ( 2142 res) fj04778s1 (2142 aa) initn: 221 init1: 221 opt: 223 Z-score: 189.5 bits: 48.3 E(): 1.9e-05 Smith-Waterman score: 235; 23.301% identity (49.838% similar) in 309 aa overlap (48-335:1666-1953) 20 30 40 50 60 70 KIAA02 TRIPDDCLALRPDMEPGCDEFLPPPECPVFEPSWAEFQDPLGYIAKIRPIAEKS--GICK .:. .: :. . . .:: :. : . KIAA14 EGNGNSFLTSNVASSKSESPVPQNEKATSAQPAAVEVAKPVDFPSP-KPIPEEMQFGWWR 1640 1650 1660 1670 1680 1690 80 90 100 110 120 130 KIAA02 IRPPADWQPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIA-KFWEIQGSSL---K : : : . . : . : : . :. : . .:.:. : : .. : . KIAA14 IIDPEDLKALLKV------LHLRGIREKALQKQIQKHLDYITQACLKNKDVAIIELNENE 1700 1710 1720 1730 1740 140 150 160 170 KIAA02 IPNVERKILDLYSLSKQCNTHPFD--NEVKDKEYK-------------PHSIPLRQSVQP .: : :.. .:. .: .. ..:.: : . :. :... KIAA14 ENQVTRDIVENWSVEEQAMEMDLSVLQQVEDLERRVASASLQVKGWMCPEPASEREDLVY 1750 1760 1770 1780 1790 1800 180 190 200 210 220 230 KIAA02 SKFSSYSRRAKRLQPDPEPTEEDIEKHPELKKLQIYGPGPKMMGLGLMAKDKDKTVHKKV . .:... : . : : : :: . :.. . .: ... .: : ........ KIAA14 FEHKSFTKLCK--EHDGEFTGEDESSAHALER---KSDNPLDIAVTRLA-DLERNIERRI 1810 1820 1830 1840 1850 1860 240 250 260 270 280 290 KIAA02 TCPPTVTVKDEQSGGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRG ... . : : :.. : . .::.:. . . : . ::.: .: KIAA14 --------EEDIAPGLRVWRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKG 1870 1880 1890 1900 1910 300 310 320 330 340 350 KIAA02 DEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYS :... ::.::::: . : .: : . :: : : :: :: KIAA14 DNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKIKKLHVKGKKTN 1920 1930 1940 1950 1960 1970 360 370 380 390 400 410 KIAA02 LQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGF KIAA14 ESKKGKKVTLTGDTEDEDSASTSSSLKRGNKDLKKRKMEENTSINLSKQESFTSVKKPKR 1980 1990 2000 2010 2020 2030 >>KIAA0314 ( 1899 res) af02425 (1899 aa) initn: 222 init1: 152 opt: 218 Z-score: 185.9 bits: 47.4 E(): 3.1e-05 Smith-Waterman score: 218; 36.082% identity (59.794% similar) in 97 aa overlap (274-362:1657-1749) 250 260 270 280 290 300 KIAA02 VKDEQSGGGNVSSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLL ::... . . ... : :: .::.:. :: KIAA03 ISYEITPRIRVWRQTLERCRSAAQVCLCLGQLERSIAWEKSVNKVTCLVCRKGDNDEFLL 1630 1640 1650 1660 1670 1680 310 320 330 340 350 KIAA02 FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC----ILAECKQPPEAFGFEQATQE----Y .::::: . ::.: : . .:.: : : : . .: : : :: . :. : KIAA03 LCDGCDRGCHIYCHRPKMEAVPEGDWFCTVCLAQQVEGEFTQKP---GFPKRGQKRKSGY 1690 1700 1710 1720 1730 1740 360 370 380 390 400 410 KIAA02 SLQSFGEMADSFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSG :: .:.: KIAA03 SL-NFSEGDGRRRRVLLRGRESPAAGPRYSEEGLSPSKRRRLSMRNHHSDLTFCEIILME 1750 1760 1770 1780 1790 1800 >>KIAA1696 ( 635 res) fj12768 (635 aa) initn: 179 init1: 179 opt: 208 Z-score: 183.2 bits: 45.3 E(): 4.4e-05 Smith-Waterman score: 208; 27.746% identity (54.335% similar) in 173 aa overlap (172-334:321-487) 150 160 170 180 190 200 KIAA02 LYSLSKQCNTHPFDNEVKDKEYKPHSIPLRQSVQPSKFSSYSRRAK-RLQPDPEPTEEDI :.:: :: : .. .: . . : . :: KIAA16 GQTATIAKTFPMAQLTSIVIATPGTRLAGPQTVQLSKPSLEKQTVKSHTETDEKQTESRT 300 310 320 330 340 350 210 220 230 240 250 KIAA02 EKHPELKKLQIYGPGPK----MMGLGLMAKDKDKTVHKKVTCPPTVTVKDEQSGGGNV-- : : . .:. :..:::...:. . ...: :. . .:. KIAA16 ITPPAAPKPK-REENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSGAVFEP 360 370 380 390 400 260 270 280 290 300 310 KIAA02 ---SSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDN .:.. . ...: :. . ..: : .:.:: .. . ::.:: :. KIAA16 ERKKSAVTYLNSTMHPGTRKRAN--EEHWPKGDIHEDFCSVCRKSGQ---LLMCDTCSRV 410 420 430 440 450 460 320 330 340 350 360 370 KIAA02 YHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDY ::. :: ::: ::.:.: ::.: KIAA16 YHLDCLDPPLKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKL 470 480 490 500 510 520 >>KIAA1506 ( 3309 res) ff04330 (3309 aa) initn: 242 init1: 210 opt: 211 Z-score: 176.9 bits: 46.6 E(): 9.8e-05 Smith-Waterman score: 211; 36.842% identity (70.175% similar) in 57 aa overlap (285-341:450-504) 260 270 280 290 300 310 KIAA02 SSTLLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHI .. .:..:... . .::.:: :: .:: KIAA15 LACSQCGQCYHPYCVSIKITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHT 420 430 440 450 460 470 320 330 340 350 360 370 KIAA02 FCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFNM .:: ::: .:.: :.: :. :.. KIAA15 YCLDPPLQTVPKGGWKCKWCVW--CRHCGATSAGLRCEWQNNYTQCAPCASLSSCPVCYR 480 490 500 510 520 530 >>KIAA0383 ( 1781 res) hh00708s1 (1781 aa) initn: 171 init1: 171 opt: 197 Z-score: 168.2 bits: 44.1 E(): 0.0003 Smith-Waterman score: 210; 25.571% identity (52.055% similar) in 219 aa overlap (124-334:120-317) 100 110 120 130 140 150 KIAA02 RFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERKILDLYSLSKQCNTHP : .::::: :.:. . . .:.. :. KIAA03 KSAKGSRGSCNDLRNVDWNKLLRRAIEGLEEPNGSSLK--NIEKYLRSQSDLTSTTNNPA 90 100 110 120 130 140 160 170 180 190 200 KIAA02 FDNEVK--DKEYKPHSIPLRQSVQPS-KFSSYSRRAKRLQPDPEPTE-EDIEKHPELKKL :..... :. .. :... : ...: . .. :. :. . :. : KIAA03 FQQRLRLGAKRAVNNGRLLKDGPQYRVNYGSLDGKGAPQYPSAFPSSLPPVSLLPHEKDQ 150 160 170 180 190 200 210 220 230 240 250 260 KIAA02 QIYGPGPKM-MGLGLMAKDKDKTVHKKVTCPPTVTVKDEQSGGGNVSSTLLKQHLSLEPC : : . :: ....: .. ..: : :.: : : : KIAA03 PRADPIPICSFCLGTKESNREKKPEELLSCA------DCGSSG----------HPS---C 210 220 230 240 270 280 290 300 310 320 KIAA02 TKTTMQLRKNHSSA--QFIDSYICQVCS-RGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP : .: : .. : :. :..: .: . :..::::.:: ..:. : ::: ..: KIAA03 LKFCPELTTNVKALRWQCIECKTCSACRVQGRNADNMLFCDSCDRGFHMECCDPPLSRMP 250 260 270 280 290 300 330 340 350 360 370 380 KIAA02 RGIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFNMPVHMVPTELVE .:.: : : KIAA03 KGMWICQVCRPKKKGRKLLHEKAAQIKRRYAKPIGRPKNKLKQRLLSVTSDEGSMNAFTG 310 320 330 340 350 360 >>KIAA0783 ( 899 res) hk05408 (899 aa) initn: 172 init1: 145 opt: 168 Z-score: 147.0 bits: 39.2 E(): 0.0045 Smith-Waterman score: 168; 39.216% identity (66.667% similar) in 51 aa overlap (288-334:737-787) 260 270 280 290 300 310 KIAA02 LLKQHLSLEPCTKTTMQLRKNHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCL : : .:... .. ::.:: : .::. :: KIAA07 IPAILRAPKERKPSKKEGGTQKTSTLPAVLYSCGICKKNHDQHLLLLCDTCKLHYHLGCL 710 720 730 740 750 760 320 330 340 350 360 370 KIAA02 LPPLPEIPR----GIWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDYFN ::: ..:: . :.: .: KIAA07 DPPLTRMPRKTKNSYWQCSECDQAGSSDMEADMAMETLPDGTKRSRRQIKEPVKFVPQDV 770 780 790 800 810 820 1512 residues in 1 query sequences 1985993 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:43 2008 done: Thu Dec 18 15:12:45 2008 Total Scan time: 0.840 Total Display time: 0.450 Function used was FASTA [version 34.26.5 April 26, 2007]