hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20555661/chunk_1/iprscan-20080501-20555661.nocrc
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Query sequence: KIAA0229
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 172.8    3.4e-47   6
SM00462                                                 159.0    4.9e-43   1
SM00454                                                 132.4      5e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00248    1/6     125   154 ..     1    30 []    34.7  1.2e-05
SM00248    2/6     158   187 ..     1    30 []    26.0   0.0051
SM00248    3/6     194   223 ..     1    30 []    32.8  4.7e-05
SM00248    4/6     227   256 ..     1    30 []    25.0     0.01
SM00248    5/6     260   289 ..     1    30 []    33.5  2.9e-05
SM00248    6/6     292   321 ..     1    30 []    20.8     0.19
SM00454    1/2     739   808 ..     1    67 []    71.3  1.2e-16
SM00454    2/2     813   881 ..     1    67 []    61.0  1.5e-13
SM00462    1/1     983  1117 ..     1   156 []   159.0  4.9e-43

Alignments of top-scoring domains:
SM00248: domain 1 of 6, from 125 to 154: score 34.7, E = 1.2e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa ng+++vv+ Ll+++a  n+   
    KIAA0229   125    TGYTPLHHAALNGHKDVVEVLLRNDALTNV    154  

SM00248: domain 2 of 6, from 158 to 187: score 26.0, E = 0.0051
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+ pLHlAa +g+  +v+lL+  g++ +    
    KIAA0229   158    KGCYPLHLAAWKGDAQIVRLLIHQGPSHTR    187  

SM00248: domain 3 of 6, from 194 to 223: score 32.8, E = 4.7e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      d+ T+LH+Aa++g+ evvk Ll++  d+++   
    KIAA0229   194    DNETALHCAAQYGHTEVVKVLLEELTDPTM    223  

SM00248: domain 4 of 6, from 227 to 256: score 25.0, E = 0.01
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                         TpL lAa +g+levvk+Ll++ +++     
    KIAA0229   227    KFETPLDLAALYGRLEVVKMLLNAHPNLLS    256  

SM00248: domain 5 of 6, from 260 to 289: score 33.5, E = 2.9e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpLHlAa+ng++ vv+ Lld+g d n+   
    KIAA0229   260    KKHTPLHLAARNGHKAVVQVLLDAGMDSNY    289  

SM00248: domain 6 of 6, from 292 to 321: score 20.8, E = 0.19
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  ++LH Aa  g  +vv++Ll +g d+n+   
    KIAA0229   292    EMGSALHEAALFGKTDVVQILLAAGTDVNI    321  

SM00454: domain 1 of 2, from 739 to 808: score 71.3, E = 1.2e-16
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt..seedLk
                       s+  + sV+eWLesigl+qY++ ++ ng+d  ++l  +  +e+dL 
    KIAA0229   739    GSrTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNvmEEQDLR 785  

                   elGitllGhRkkIlsaiqklkeq<-*
                   ++Gi++++hR+k+l+a ++l +    
    KIAA0229   786 DIGISDPQHRRKLLQAARSLPKV    808  

SM00454: domain 2 of 2, from 813 to 881: score 61.0, E = 1.5e-13
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.seedLke
                      ++++sp+sV  WL+s+gl++Y+  F++ g+++ + ++ + ++e+ + 
    KIAA0229   813    YDgNSPPSVPSWLDSLGLQDYVHSFLSSGYSSIDTVKNLwELELVNV 859  

                   lGitllGhRkkIlsaiqklkeq<-*
                   l+++llGhRk+I+ ++ +   +   
    KIAA0229   860 LKVQLLGHRKRIIASLADRPYE    881  

SM00462: domain 1 of 1, from 983 to 1117: score 159.0, E = 4.9e-43
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr...sekk
                      +e + +e+ YLGs+ ++  r       g++  q+a++k+r++++++k
    KIAA0229   983    FESCGYEANYLGSMLIKDLR-------GTESTQDACAKMRkstEHMK 1022 

                   kpqkvilsvSsdgvklidektkqvlaehplrrIsfcaadpqrwntGgdgs
                   k  ++ils++ +gvk id+ +k+v+aeh +r+Is++a+dp          
    KIAA0229  1023 KIPTIILSITYKGVKFIDASNKNVIAEHEIRNISCAAQDP---------- 1062 

                   tdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaa.aedialaigqaF
                    +d+++F+yi++d  +s       ++ CHVF + +++ +++i+l++gqaF
    KIAA0229  1063 -EDLCTFAYITKDLQTS-------HHYCHVFSTVDVNlTYEIILTLGQAF 1104 

                   qvayelklkarse<-*
                   +vay+l+l+a ++   
    KIAA0229  1105 EVAYQLALQAQKS    1117 

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