hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20555661/chunk_1/iprscan-20080501-20555661.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0229 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.fs Ankyrin repeat 194.6 2.2e-55 8 PF00023.20.ls Ankyrin repeat 194.1 3.2e-55 7 PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID) 182.6 1.9e-53 1 PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID) 184.5 2.4e-52 1 PF00536.20.fs SAM domain (Sterile alpha motif) 133.2 1.3e-38 2 PF00536.20.ls SAM domain (Sterile alpha motif) 137.2 4.1e-38 2 PF07647.7.fs SAM domain (Sterile alpha motif) 92.5 1.8e-26 2 PF07647.7.ls SAM domain (Sterile alpha motif) 89.3 1.1e-23 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/7 48 124 .. 1 33 [] 1.0 21 PF00023.20.fs 1/8 53 124 .. 6 33 .] 4.9 2.2 PF00023.20.ls 2/7 125 157 .. 1 33 [] 38.4 2.3e-08 PF00023.20.fs 2/8 125 157 .. 1 33 [] 36.4 3.7e-09 PF00023.20.fs 3/8 158 190 .. 1 33 [] 31.2 1e-07 PF00023.20.ls 3/7 158 190 .. 1 33 [] 33.2 8.3e-07 PF00023.20.ls 4/7 194 226 .. 1 33 [] 38.7 1.8e-08 PF00023.20.fs 4/8 194 226 .. 1 33 [] 36.7 2.9e-09 PF00023.20.fs 5/8 227 259 .. 1 33 [] 22.8 2.2e-05 PF00023.20.ls 5/7 227 259 .. 1 33 [] 24.8 0.00028 PF00023.20.fs 6/8 260 292 .. 1 33 [] 34.8 1e-08 PF00023.20.ls 6/7 260 292 .. 1 33 [] 36.8 7e-08 PF00023.20.ls 7/7 293 324 .. 1 33 [] 21.2 0.0036 PF00023.20.fs 7/8 295 324 .. 4 33 .] 27.6 1e-06 PF07647.7.ls 1/2 740 808 .. 1 72 [] 50.7 4.4e-12 PF00536.20.ls 1/2 740 806 .. 1 65 [] 62.2 1.5e-15 PF00536.20.fs 1/2 740 806 .. 1 65 [] 60.2 4.1e-17 PF07647.7.fs 1/2 745 808 .. 7 72 .] 51.0 2.7e-14 PF07647.7.fs 2/2 813 875 .. 1 66 [. 41.5 1.6e-11 PF07647.7.ls 2/2 813 881 .. 1 72 [] 38.6 2e-08 PF00536.20.ls 2/2 814 879 .. 1 65 [] 75.0 2.2e-19 PF00536.20.fs 2/2 814 879 .. 1 65 [] 73.0 7.3e-21 PF00023.20.fs 8/8 895 910 .. 18 33 .] 0.0 50 PF00640.13.ls 1/1 988 1114 .. 1 165 [] 184.5 2.4e-52 PF00640.13.fs 1/1 988 1114 .. 1 165 [] 182.6 1.9e-53 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 7, from 48 to 124: score 1.0, E = 21 *->dGfTPLHlAalrg.................................. + L Aa+ g+ + ++ +++ +++ ++++++++++++++++ KIAA0229 48 GKEQELLEAARTGhlpavekllsgkrlssgfgggggggsggggggsg 94 ........nlevvklLls..qGAdlnaqdd<-* +++++ +++ ++ Lls +G ++n +d KIAA0229 95 ggggglgsSSHPLSSLLSmwRGPNVNCVDS 124 PF00023.20.fs: domain 1 of 8, from 53 to 124: score 4.9, E = 2.2 *->LHlAalrg....................................... L Aa+ g+ + ++ +++ +++ +++++++++++++++++++++ KIAA0229 53 LLEAARTGhlpavekllsgkrlssgfgggggggsggggggsgggggg 99 ...nlevvklLls..qGAdlnaqdd<-* +++ ++ Lls +G ++n +d KIAA0229 100 lgsSSHPLSSLLSmwRGPNVNCVDS 124 PF00023.20.ls: domain 2 of 7, from 125 to 157: score 38.4, E = 2.3e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aal+g+++vv+ Ll + A n+ d KIAA0229 125 TGYTPLHHAALNGHKDVVEVLLRNDALTNVADS 157 PF00023.20.fs: domain 2 of 8, from 125 to 157: score 36.4, E = 3.7e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aal+g+++vv+ Ll + A n+ d KIAA0229 125 TGYTPLHHAALNGHKDVVEVLLRNDALTNVADS 157 PF00023.20.fs: domain 3 of 8, from 158 to 190: score 31.2, E = 1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLHlAa +g++++v+lL+ qG + ++ KIAA0229 158 KGCYPLHLAAWKGDAQIVRLLIHQGPSHTRVNE 190 PF00023.20.ls: domain 3 of 7, from 158 to 190: score 33.2, E = 8.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLHlAa +g++++v+lL+ qG + ++ KIAA0229 158 KGCYPLHLAAWKGDAQIVRLLIHQGPSHTRVNE 190 PF00023.20.ls: domain 4 of 7, from 194 to 226: score 38.7, E = 1.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T+LH+Aa++g++evvk Ll+ d+ ++++ KIAA0229 194 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNN 226 PF00023.20.fs: domain 4 of 8, from 194 to 226: score 36.7, E = 2.9e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d +T+LH+Aa++g++evvk Ll+ d+ ++++ KIAA0229 194 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNN 226 PF00023.20.fs: domain 5 of 8, from 227 to 259: score 22.8, E = 2.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lAal+g+levvk+Ll++ +l + KIAA0229 227 KFETPLDLAALYGRLEVVKMLLNAHPNLLSCNT 259 PF00023.20.ls: domain 5 of 7, from 227 to 259: score 24.8, E = 0.00028 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPL lAal+g+levvk+Ll++ +l + KIAA0229 227 KFETPLDLAALYGRLEVVKMLLNAHPNLLSCNT 259 PF00023.20.fs: domain 6 of 8, from 260 to 292: score 34.8, E = 1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa++g++ vv+ Ll++G d n q+ KIAA0229 260 KKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTE 292 PF00023.20.ls: domain 6 of 7, from 260 to 292: score 36.8, E = 7e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* TPLHlAa++g++ vv+ Ll++G d n q+ KIAA0229 260 KKHTPLHLAARNGHKAVVQVLLDAGMDSNYQTE 292 PF00023.20.ls: domain 7 of 7, from 293 to 324: score 21.2, E = 0.0036 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G ++LH Aal g ++vv+ Ll +G d+n++d+ KIAA0229 293 MG-SALHEAALFGKTDVVQILLAAGTDVNIKDN 324 PF00023.20.fs: domain 7 of 8, from 295 to 324: score 27.6, E = 1e-06 *->TPLHlAalrgnlevvklLlsqGAdlnaqdd<-* ++LH Aal g ++vv+ Ll +G d+n++d+ KIAA0229 295 SALHEAALFGKTDVVQILLAAGTDVNIKDN 324 PF07647.7.ls: domain 1 of 2, from 740 to 808: score 50.7, E = 4.4e-12 *->veswslesvaeWLesiglegqYkdnFsdqgitglelll..lrlteed + sv+eWLesigl +qY+ +++ +g++ + l++ ++e+d KIAA0229 740 SRTLEQ-SVGEWLESIGL-QQYESKLLLNGFDD-VHFLgsNVMEEQD 783 LaklalGitsvghRkkilkkiqelkqq<-* L ++Gi++++hR+k+l+++ +l KIAA0229 784 L-R-DIGISDPQHRRKLLQAARSLPKV 808 PF00536.20.ls: domain 1 of 2, from 740 to 806: score 62.2, E = 1.5e-15 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeD..Led + + +sVgeWLesigl+qY++ l +g++d++ l +e+++L+d KIAA0229 740 SRTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEqdLRD 786 lGvtllGHrkKIlssIqgLk<-* +G+ + Hr K+l++ + L KIAA0229 787 IGISDPQHRRKLLQAARSLP 806 PF00536.20.fs: domain 1 of 2, from 740 to 806: score 60.2, E = 4.1e-17 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeD..Led + + +sVgeWLesigl+qY++ l +g++d++ l +e+++L+d KIAA0229 740 SRTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEqdLRD 786 lGvtllGHrkKIlssIqgLk<-* +G+ + Hr K+l++ + L KIAA0229 787 IGISDPQHRRKLLQAARSLP 806 PF07647.7.fs: domain 1 of 2, from 745 to 808: score 51.0, E = 2.7e-14 *->esvaeWLesiglegqYkdnFsdqgitglelll..lrlteedLaklal +sv+eWLesigl +qY+ +++ +g++ + l++ ++e+dL ++ KIAA0229 745 QSVGEWLESIGL-QQYESKLLLNGFDD-VHFLgsNVMEEQDL-R-DI 787 GitsvghRkkilkkiqelkqq<-* Gi++++hR+k+l+++ +l KIAA0229 788 GISDPQHRRKLLQAARSLPKV 808 PF07647.7.fs: domain 2 of 2, from 813 to 875: score 41.5, E = 1.6e-11 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++ s++sv +WL+s+gl ++Y+ +F++ g+++++ + ++l e +L KIAA0229 813 YDGNSPPSVPSWLDSLGL-QDYVHSFLSSGYSSIDTV-KNLWELEL- 856 klalGitsvghRkkilkki<-* + l+++++ghRk+i+ ++ KIAA0229 857 VNVLKVQLLGHRKRIIASL 875 PF07647.7.ls: domain 2 of 2, from 813 to 881: score 38.6, E = 2e-08 *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa ++ s++sv +WL+s+gl ++Y+ +F++ g+++++ + ++l e +L KIAA0229 813 YDGNSPPSVPSWLDSLGL-QDYVHSFLSSGYSSIDTV-KNLWELEL- 856 klalGitsvghRkkilkkiqelkqq<-* + l+++++ghRk+i+ ++ + + KIAA0229 857 VNVLKVQLLGHRKRIIASLADRPYE 881 PF00536.20.ls: domain 2 of 2, from 814 to 879: score 75.0, E = 2.2e-19 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l dg+s+ sV+ WL+s+gl+ Y+++Fls+gy+++dt+ +l+e +L++ l KIAA0229 814 DGNSPPSVPSWLDSLGLQDYVHSFLSSGYSSIDTVKNLWELELVNvL 860 GvtllGHrkKIlssIqgLk<-* +v llGHrk+I s+ + KIAA0229 861 KVQLLGHRKRIIASLADRP 879 PF00536.20.fs: domain 2 of 2, from 814 to 879: score 73.0, E = 7.3e-21 *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l dg+s+ sV+ WL+s+gl+ Y+++Fls+gy+++dt+ +l+e +L++ l KIAA0229 814 DGNSPPSVPSWLDSLGLQDYVHSFLSSGYSSIDTVKNLWELELVNvL 860 GvtllGHrkKIlssIqgLk<-* +v llGHrk+I s+ + KIAA0229 861 KVQLLGHRKRIIASLADRP 879 PF00023.20.fs: domain 8 of 8, from 895 to 910: score 0.0, E = 50 *->vklLlsqGAdlnaqdd<-* +++Llsq ++ q+d KIAA0229 895 CQDLLSQTSSPLSQND 910 PF00640.13.ls: domain 1 of 1, from 988 to 1114: score 184.5, E = 2.4e-52 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk +e++YLGs+ +++ ++ ++ +++A ++km+ KIAA0229 988 YEANYLGSMLIKDLRG-------TESTQDA--CAKMR---------- 1015 ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF +s+++++++ +i+Lsi+++g+k++d+ + k+v+++h++r+IS+ KIAA0229 1016 -----KSTEHMKKIPTIILSITYKGVKFIDASN---KNVIAEHEIRNISC 1057 iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi +a+ Dp+ dl+tFay i++d +t++++CHvF +++ ++l+++i KIAA0229 1058 AAQ--DPE-DLCTFAY-------ITKDLQTSHHYCHVFSTVD-VNLTYEI 1096 aqavGqAFevaYqeflra<-* ++++GqAFevaYq+ l+a KIAA0229 1097 ILTLGQAFEVAYQLALQA 1114 PF00640.13.fs: domain 1 of 1, from 988 to 1114: score 182.6, E = 1.9e-53 *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk +e++YLGs+ +++ ++ ++ +++A ++km+ KIAA0229 988 YEANYLGSMLIKDLRG-------TESTQDA--CAKMR---------- 1015 ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF +s+++++++ +i+Lsi+++g+k++d+ + k+v+++h++r+IS+ KIAA0229 1016 -----KSTEHMKKIPTIILSITYKGVKFIDASN---KNVIAEHEIRNISC 1057 iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi +a+ Dp+ dl+tFay i++d +t++++CHvF +++ ++l+++i KIAA0229 1058 AAQ--DPE-DLCTFAY-------ITKDLQTSHHYCHVFSTVD-VNLTYEI 1096 aqavGqAFevaYqeflra<-* ++++GqAFevaYq+ l+a KIAA0229 1097 ILTLGQAFEVAYQLALQA 1114 //