hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20542079/chunk_1/iprscan-20080501-20542079.nocrc
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Query sequence: KIAA0228
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  32.5    5.8e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/3     342   375 ..     1    34 []     2.3  2.7e+02
SM00028    2/3     525   558 ..     1    34 []    28.0   0.0013
SM00028    3/3     567   601 ..     1    34 []     2.2  2.9e+02

Alignments of top-scoring domains:
SM00028: domain 1 of 3, from 342 to 375: score 2.3, E = 2.7e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      +++l +   a+  + ++++A++  + A+ l++++   
    KIAA0228   342    VDVLRQASKACVVKREFKKAEQLIKHAVYLARDH    375  

SM00028: domain 2 of 3, from 525 to 558: score 28.0, E = 0.0013
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ + nlG +y ++ +++eA+e   kA+++ ++    
    KIAA0228   525    AKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQL    558  

SM00028: domain 3 of 3, from 567 to 601: score 2.2, E = 2.9e+02
                   *->aealynlGnay.lklgdydeAieyyekALeldPnn<-*
                      a     l+ +y++ +++y+ A++ y +++++  +    
    KIAA0228   567    ALSVGHLASLYnYDMNQYENAEKLYLRSIAIGKKL    601  

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