# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha04738.fasta.huge -Q ../query/KIAA0228.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0228, 681 aa
 vs ./tmplib.23147 library

1986824 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.4420+/-0.00555; mu= 19.1092+/- 0.378
 mean_var=106.5297+/-24.925, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.124262

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA2000  ( 699 res)   bf00135                     ( 699)  168 41.2 0.00039
KIAA0664  ( 1134 res)   hk02041                    (1134)  146 37.5  0.0079


>>KIAA2000  ( 699 res)   bf00135                          (699 aa)
 initn: 240 init1: 139 opt: 168  Z-score: 166.1  bits: 41.2 E(): 0.00039
Smith-Waterman score: 235;  25.194% identity (60.078% similar) in 258 aa overlap (384-628:285-537)

           360       370       380       390       400       410   
KIAA02 VKREFKKAEQLIKHAVYLARDHFGSKHPKYSDTLLDYGFYLLNVDNICQSVAIYQAALDI
                                     .:     : .: ..  . :...  : .:.:
KIAA20 KDKSAMATEYFDSLKQYEKNCEGEDNMSCLADLYETLGRFLKDLGLLSQAIVPLQRSLEI
          260       270       280       290       300       310    

           420       430       440       450       460       470   
KIAA02 RQSVFGGKNIHVATAHEDLAYSSYVHQYSSGKFDNALFHAERAIGIITHILPEDHLLLAS
       :....   . .:: . ..:: : :: :..  :: ::    ..:. :  .    ::   : 
KIAA20 RETALDPDHPRVAQSLHQLA-SVYV-QWK--KFGNAEQLYKQALEISENAYGADHPYTAR
          320       330         340         350       360       370

           480            490         500             510       520
KIAA02 SKRVKALILE-----EIAIDCHNK--ETEQRLLQEAHDLH------LSSLQLAKKAFGEF
         .. : . .     : :   ..:  . .:. ...  .:.        .::: . ..:. 
KIAA20 ELEALATLYQKQNKYEQAEHFRKKSFKIHQKAIKKKGNLYGFALLRRRALQLEELTLGKD
              380       390       400       410       420       430

              530       540       550       560       570       580
KIAA02 NVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASLYNYD
       . ..:.  ..:: ::  . ... :...  ......:..:: .  . : :...::.: : .
KIAA20 TPDNARTLNELGVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCN-E
              440       450       460       470       480          

              590       600       610       620       630       640
KIAA02 MNQYENAEKLYLRSIAIGKKLFGEGYSGLEYDYRGLIKLYNSIGNYEKVFEYHNVLSNWN
        .::..::.:: :.. : .. ..  . .: :  . :  ::...:. .:            
KIAA20 KKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIR
     490       500       510       520       530       540         

              650       660       670       680                    
KIAA02 RLRDRQYSVTDALEDVSTSPQSTEEVVQSFLISQNVEGPSC                   
                                                                   
KIAA20 QKSFGPKHPSVATALVNLAVLYSQMKKHVEALPLYERALKIYEDSLGRMHPRVGETLKNL
     550       560       570       580       590       600         

>>KIAA0664  ( 1134 res)   hk02041                         (1134 aa)
 initn:  76 init1:  76 opt: 146  Z-score: 142.7  bits: 37.5 E(): 0.0079
Smith-Waterman score: 151;  28.426% identity (54.315% similar) in 197 aa overlap (303-487:839-1029)

            280       290       300       310              320     
KIAA02 CKYHLGEETFKLAQTYMDKLSKHGQQANKAALYGELCALL--FAKSHY---D--EAYKWC
                                     :.. : :: :  .:. ::   :  :: .  
KIAA06 SGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVETCACLRLLARLHYIMGDYAEALSNQ
      810       820       830       840       850       860        

           330       340       350       360       370       380   
KIAA02 IEA--MKEITAGLPVKVVVDVLRQASKACVVKREFKKAEQLIKHAVYLARDHFGSKHPKY
        .:  :.: . :     ...   . .  : .. ... : .:. .: ::    ::  ::..
KIAA06 QKAVLMSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEM
      870       880       890       900       910       920        

             390       400       410       420       430       440 
KIAA02 SDTLLD--YGFYLLNVDNICQSVAIYQAALDIRQSVFGGKNIHVATAHEDLAYSSYVHQY
       .  :::   :. : .: .   :. . . :: .  .  : : ..:: .:. .:    :.. 
KIAA06 A--LLDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVALSHHLVAR---VYE-
        930       940       950       960       970          980   

             450       460       470        480       490       500
KIAA02 SSGKFDNALFHAERAIGIITHILPEDHLLLA-SSKRVKALILEEIAIDCHNKETEQRLLQ
       :...: .:: : ...  :    : :::     ::. .: :  . .:.             
KIAA06 SKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNGSS
            990      1000      1010      1020      1030      1040  

              510       520       530       540       550       560
KIAA02 EAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLG
                                                                   
KIAA06 ANIPPLKFTAPSMASVLEQLNVINGILFIPLSQKDLENLKAEVARRHQLQEASRNRDRAE
           1050      1060      1070      1080      1090      1100  




681 residues in 1 query   sequences
1986824 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:29 2008 done: Thu Dec 18 15:12:29 2008
 Total Scan time:  0.530 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]