hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20510742/chunk_1/iprscan-20080501-20510742.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0226 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00593 71.1 1.4e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00593 1/1 108 168 .. 1 68 [] 71.1 1.4e-16 Alignments of top-scoring domains: SM00593: domain 1 of 1, from 108 to 168: score 71.1, E = 1.4e-16 *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee +++w++++L++++Ls++L++Ll dr++++k+Y++ Afl+s KIAA0226 108 AELWLQHSLQYHCLSAQLRPLLGDRQYIRKFYTDAAFLLS------- 147 geqlltlLqgLsaldfnlpvd<-* +++ +Lq+L+a+++n p++ KIAA0226 148 DAHVTAMLQCLEAVEQNNPRL 168 //