hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20321679/chunk_1/iprscan-20080501-20321679.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0215
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                  87.6    1.5e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/2     236   282 ..     1    39 []    52.1  7.4e-11
SM00249    2/2     345   400 ..     1    39 []    35.5  7.1e-06

Alignments of top-scoring domains:
SM00249: domain 1 of 2, from 236 to 282: score 52.1, E = 7.4e-11
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgppleepdg.wyCpr
                      +C+vC+++++++++++++Cd +C++++H+ C+g+ +  p+g+w+C +
    KIAA0215   236    ICdVCRSpdseegNdMVFCD-KCNVCVHQaCYGILKV-PEGsWLCRS 280  

                   Ck<-*
                   C+   
    KIAA0215   281 CV    282  

SM00249: domain 2 of 2, from 345 to 400: score 35.5, E = 7.1e-06
                   *->yC.vCgk..g.llqCd.kgCdrwyHv.Clgpple..........epd
                      +C++C+ ++g ++qC+ k+C +++Hv+C+   +++ ++  ++++e++
    KIAA0215   345    VCnLCKLktGaCIQCSiKSCITAFHVtCAFEHGLemktildegdEVK 391  

                   g.wyCprCk<-*
                   ++ yC +++   
    KIAA0215   392 FkSYCLKHS    400  

//