hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20204463/chunk_1/iprscan-20080501-20204463.nocrc
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Query sequence: KIAA0208
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00021                                                 195.7    4.3e-54   1
SM00049                                                 106.0    4.2e-27   1
SM00228                                                  69.6    3.8e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00021    1/1      33   114 ..     1    86 []   195.7  4.3e-54
SM00228    1/1     290   369 ..     1    80 []    69.6  3.8e-16
SM00049    1/1     454   528 ..     1    90 []   106.0  4.2e-27

Alignments of top-scoring domains:
SM00021: domain 1 of 1, from 33 to 114: score 195.7, E = 4.3e-54
                   *->csetKViYhlDdEetPYlvkvpvpaervTLgdFKevLtkkgnYKYYf
                      ++etK+iYhlD++etPYlvk+p+paervTL+dFK vL+++ +YK++f
    KIAA0208    33    MGETKIIYHLDGQETPYLVKLPLPAERVTLADFKGVLQRP-SYKFFF 78   

                   KslDdDfgCgvVKeEirdDsarLrPcfNGrvvswLvsve<-*
                   Ks+DdDf  gvVKeEi+dD+a+L PcfNGrvvswLvs+e   
    KIAA0208    79 KSMDDDF--GVVKEEISDDNAKL-PCFNGRVVSWLVSAE    114  

SM00228: domain 1 of 1, from 290 to 369: score 69.6, E = 3.8e-16
                   *->gglGfsivg........gifvssvvpGspAakaGrkslglLkvGDvI
                      + lG+sivg++++++++gi++ s+++G++ a +Gr     + +GD++
    KIAA0208   290    NFLGISIVGqsnergdgGIYIGSIMKGGAVAADGR-----IEPGDML 331  

                   leVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   l+VN  ++ e+++ ++av++l++        ++tLtv +     
    KIAA0208   332 LQVNE-INFENMSNDDAVRVLREIVHKP--GPITLTVAKCW    369  

SM00049: domain 1 of 1, from 454 to 528: score 106.0, E = 4.2e-27
                   *->pesglklddrkyflktypncFtGselVdWLldnlegqsnngptkttf
                      pesgl+++dr+++++t+pn+F+Gs++VdWL++n+eg           
    KIAA0208   454    PESGLEVRDRMWLKITIPNAFIGSDVVDWLYHNVEG----------- 489  

                   iidreeAvhlgqaLlkeGlihhvndpnkhtFkdsknalYrFtd<-*
                     dr+eA+++++ Llk+G+i+h +  nk tF++  +++Y F+d   
    KIAA0208   490 FTDRREARKYASNLLKAGFIRHTV--NKITFSE--QCYYIFGD    528  

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