hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20204463/chunk_1/iprscan-20080501-20204463.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0208 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00778.8.fs DIX domain 199.2 8.4e-61 1 PF00778.8.ls DIX domain 201.1 2.4e-57 1 PF02377.6.fs Dishevelled specific domain 138.7 1.1e-47 1 PF02377.6.ls Dishevelled specific domain 140.7 3.7e-39 1 PF00610.11.ls Domain found in Dishevelled, Egl-10, and 121.0 3.1e-33 1 PF00610.11.fs Domain found in Dishevelled, Egl-10, and 119.1 1.1e-32 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 97.0 1.3e-26 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 99.0 1.3e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00778.8.ls 1/1 33 114 .. 1 87 [] 201.1 2.4e-57 PF00778.8.fs 1/1 33 114 .. 1 87 [] 199.2 8.4e-61 PF02377.6.fs 1/1 174 245 .. 1 74 [] 138.7 1.1e-47 PF02377.6.ls 1/1 174 245 .. 1 74 [] 140.7 3.7e-39 PF00595.14.ls 1/1 281 366 .. 1 86 [] 99.0 1.3e-26 PF00595.14.fs 1/1 281 366 .. 1 86 [] 97.0 1.3e-26 PF00610.11.fs 1/1 454 526 .. 1 80 [] 119.1 1.1e-32 PF00610.11.ls 1/1 454 526 .. 1 80 [] 121.0 3.1e-33 Alignments of top-scoring domains: PF00778.8.ls: domain 1 of 1, from 33 to 114: score 201.1, E = 2.4e-57 *->csetKViYhLDdEetPYlvkvpvpaervTLgdFKevLtkrngsYKYy ++etK+iYhLD++etPYlvk+p+paervTL+dFK vL+++ sYK++ KIAA0208 33 MGETKIIYHLDGQETPYLVKLPLPAERVTLADFKGVLQRP--SYKFF 77 fKslDpDfdCgvVKeEirdDsarLrPcfNgrvvswLvsve<-* fKs+D+Df gvVKeEi+dD+a+L PcfNgrvvswLvs+e KIAA0208 78 FKSMDDDF--GVVKEEISDDNAKL-PCFNGRVVSWLVSAE 114 PF00778.8.fs: domain 1 of 1, from 33 to 114: score 199.2, E = 8.4e-61 *->csetKViYhLDdEetPYlvkvpvpaervTLgdFKevLtkrngsYKYy ++etK+iYhLD++etPYlvk+p+paervTL+dFK vL+++ sYK++ KIAA0208 33 MGETKIIYHLDGQETPYLVKLPLPAERVTLADFKGVLQRP--SYKFF 77 fKslDpDfdCgvVKeEirdDsarLrPcfNgrvvswLvsve<-* fKs+D+Df gvVKeEi+dD+a+L PcfNgrvvswLvs+e KIAA0208 78 FKSMDDDF--GVVKEEISDDNAKL-PCFNGRVVSWLVSAE 114 PF02377.6.fs: domain 1 of 1, from 174 to 245: score 138.7, E = 1.1e-47 *->rRdrprrlarteqasvlnglkamGarrrqpggrydsssslLsSElds +R+rprr++++e+a++lng+++ G+rrr+pgg ydsss+l+sSEl++ KIAA0208 174 QRERPRRRDGPEHATRLNGTAK-GERRREPGG-YDSSSTLMSSELET 218 tsffDsdeddtldRfSssTdqSSvSRL<-* tsffDsdedd+++RfSssT+qSS+SRL KIAA0208 219 TSFFDSDEDDSTSRFSSSTEQSSASRL 245 PF02377.6.ls: domain 1 of 1, from 174 to 245: score 140.7, E = 3.7e-39 *->rRdrprrlarteqasvlnglkamGarrrqpggrydsssslLsSElds +R+rprr++++e+a++lng+++ G+rrr+pgg ydsss+l+sSEl++ KIAA0208 174 QRERPRRRDGPEHATRLNGTAK-GERRREPGG-YDSSSTLMSSELET 218 tsffDsdeddtldRfSssTdqSSvSRL<-* tsffDsdedd+++RfSssT+qSS+SRL KIAA0208 219 TSFFDSDEDDSTSRFSSSTEQSSASRL 245 PF00595.14.ls: domain 1 of 1, from 281 to 366: score 99.0, E = 1.3e-26 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl +e k ++lG+si+g+s++++d gi++ ++++G ga +a+Gr+ KIAA0208 281 TVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKG-GAVAADGRI 325 qaGDqIlsvNGqdlenlsheeavlalkgsgg..sevtLtvl<-* ++GD++l+vN ++en+s ++av +l++++ +++++tLtv+ KIAA0208 326 EPGDMLLQVNEINFENMSNDDAVRVLREIVHkpGPITLTVA 366 PF00595.14.fs: domain 1 of 1, from 281 to 366: score 97.0, E = 1.3e-26 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl +e k ++lG+si+g+s++++d gi++ ++++G ga +a+Gr+ KIAA0208 281 TVTLNME-KYNFLGISIVGQSNERGDGGIYIGSIMKG-GAVAADGRI 325 qaGDqIlsvNGqdlenlsheeavlalkgsgg..sevtLtvl<-* ++GD++l+vN ++en+s ++av +l++++ +++++tLtv+ KIAA0208 326 EPGDMLLQVNEINFENMSNDDAVRVLREIVHkpGPITLTVA 366 PF00610.11.fs: domain 1 of 1, from 454 to 526: score 119.1, E = 1.1e-32 *->pesgvklkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhla pesg+ ++dr+wlk++ipn+F+Gs++VdWL +n++g +dr+eA+++a KIAA0208 454 PESGLEVRDRMWLKITIPNAFIGSDVVDWLYHNVEGFTDRREARKYA 500 qlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* + Llk G+irh +n+ tF++ q+yY f KIAA0208 501 SNLLKAGFIRHT------VNKITFSE-QCYYIF 526 PF00610.11.ls: domain 1 of 1, from 454 to 526: score 121.0, E = 3.1e-33 *->pesgvklkdrkwlkkvipncFtGselVdWLmdnlsgiidrkeAlhla pesg+ ++dr+wlk++ipn+F+Gs++VdWL +n++g +dr+eA+++a KIAA0208 454 PESGLEVRDRMWLKITIPNAFIGSDVVDWLYHNVEGFTDRREARKYA 500 qlLlkeGyirhvgdhltgkndhtFldkqtyYrf<-* + Llk G+irh +n+ tF++ q+yY f KIAA0208 501 SNLLKAGFIRHT------VNKITFSE-QCYYIF 526 //