# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02795.fasta.huge -Q ../query/KIAA0207.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0207, 605 aa
 vs ./tmplib.23147 library

1986900 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.1744+/-0.00658; mu= 11.5723+/- 0.447
 mean_var=164.7573+/-40.500, 0's: 0 Z-trim: 3  B-trim: 154 in 1/39
 Lambda= 0.099920

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1681  ( 1236 res)   fh23697                    (1236)  523 87.7 5.9e-18


>>KIAA1681  ( 1236 res)   fh23697                         (1236 aa)
 initn: 413 init1: 309 opt: 523  Z-score: 414.2  bits: 87.7 E(): 5.9e-18
Smith-Waterman score: 529;  28.000% identity (57.263% similar) in 475 aa overlap (27-477:94-557)

                   10        20        30        40                
KIAA02     GHSHVIPTVERGRERPPMQAAGPLFRSKDKVEQTPRSQQDPAG---------PGLP
                                     :: .. .:  .:. :..          :: 
KIAA16 LNQGETVDLDALMADLCSIEQELSSIGSGNSKRQITETKATQKLPVSRHTLKHGTLKGLS
            70        80        90       100       110       120   

        50        60        70        80          90       100     
KIAA02 AQSDRLANHQEDDVDLEALVNDMNASLESLYSAC--SMQSDTVPLLQNGQHARSQPRASG
       ..:.:.:. .. . .:. .. ... .  :.  :   :.  :: ::. : :: :.   .. 
KIAA16 SSSNRIAKPSHASYSLDDVTAQLEQASLSMDEAAQQSVLEDTKPLVTN-QHRRTASAGTV
           130       140       150       160       170        180  

         110            120       130       140       150       160
KIAA02 PPRSIQP-----QVSPRQRVQRSQPVHILAVRRLQEEDQQFRTSSLPAIPNPFPELCGPG
           ..      . :  . ..  . . :  : : :: :   . .     :    :  .  
KIAA16 SDAEVHSISNSSHSSITSAASSMDSLDIDKVTRPQELDLTHQGQ-----PITEEEQAAKL
            190       200       210       220            230       

              170       180        190       200       210         
KIAA02 SPAVLTPGSLPPSQAAAKQDV-KVFSEDGTSKVVEILADMTARDLCQLLVYKSHCVDDNS
       .   .  .    ..: .:. : .:   : .::.. .   .:.:.. . :. ::::  . .
KIAA16 KAEKIRVALEKIKEAQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLD
       240       250       260       270       280       290       

     220       230       240         250       260       270       
KIAA02 WTLVEHHPHLGLERCLEDHELVVQ--VESTMASESKFLFRKNYAKYEFFKNPMNFFPEQM
       :.:::   .: .:: .:::: .:.  .. :  :..:..: .   :: .::::.:..  . 
KIAA16 WSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFMERIEKYALFKNPQNYLLGKK
       300       310       320       330       340       350       

       280       290        300       310       320       330      
KIAA02 VTWCQQSNGSQTQLLQNFLNSS-SCPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKG
        :  . . .... : . : .:: . :::.: : .:. ::::::: :  :: ::.:   ::
KIAA16 ETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKG
       360       370       380       390       400       410       

        340       350       360       370       380       390      
KIAA02 TSKEPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQ
        .:  : :  . .:.  :..     :..:.::::. : .:  ....... .. :: .: .
KIAA16 KAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVR
       420       430       440       450       460       470       

        400       410       420           430       440       450  
KIAA02 TRTCWMTAFRLLKYGMLLYQNYRIPQQRKA----LLSPFSTPVRSVSENSLVAMDFSGQT
       :   :....:. :::  ::.::.   .:        :  :. ..: : .: .  . :...
KIAA16 TLHQWVNGIRIAKYGKQLYMNYQEALKRTESAYDWTSLSSSSIKSGSSSSSIPESQSNHS
       480       490       500       510       520       530       

            460       470       480       490       500       510  
KIAA02 GRVIENPAEAQSAALEEGHAWRKRSTRMNILGSQSPLHPSTLSTVIHRTQHWFHGRISRE
       ..   . ...: :    ::. :..:                                   
KIAA16 NQSDSGVSDTQPA----GHV-RSQSIVSSVFSEAWKRGTQLEESSKARMESMNRPYTSLV
       540       550            560       570       580       590  




605 residues in 1 query   sequences
1986900 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:11:38 2008 done: Thu Dec 18 15:11:38 2008
 Total Scan time:  0.500 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]