hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20154585/chunk_1/iprscan-20080501-20154585.nocrc
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Query sequence: KIAA0205
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00563                                                  52.9    4.3e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00563    1/1     116   232 ..     1   135 []    52.9  4.3e-11

Alignments of top-scoring domains:
SM00563: domain 1 of 1, from 116 to 232: score 52.9, E = 4.3e-11
                   *->alvvaNHqSylDplvlsallprk....rrvrfvakkelfkiPllGwl
                      a+++ NHq   D++ l+++l++k+    ++ +++ +  ++   +G++
    KIAA0205   116    AVMLVNHQATGDVCTLMMCLQDKglvvAQMMWLMDHIFKYTN-FGIV 161  

                   lrlagaifidRsng.drkaraalreavrryFEnhellkegewlviFPEGT
                      +g +fi+++++ + +    l+++++    n+++ ++++w+v+FPEG 
    KIAA0205   162 SLVHGDFFIRQGRSyRDQQLLLLKKHLE----NNYRSRDRKWIVLFPEGG 207  

                   rsrdgkldgeeerlkllpfKkGafrlAlkagdvpivPvaisgt<-*
                     r +            ++ ++a ++         +P+  + t   
    KIAA0205   208 FLRKR----------RETSQAFAKKNN--------LPFLTNVT    232  

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