hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20055658/chunk_1/iprscan-20080501-20055658.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0199 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 105.0 8.7e-27 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/6 769 806 .. 1 46 [] 20.0 0.34 SM00320 2/6 959 997 .. 1 46 [] 2.1 2.3e+02 SM00320 3/6 1071 1109 .. 1 46 [] 19.2 0.45 SM00320 4/6 1112 1150 .. 1 46 [] 40.5 2.2e-07 SM00320 5/6 1153 1190 .. 1 46 [] 18.5 0.59 SM00320 6/6 1193 1230 .. 1 46 [] 4.7 88 Alignments of top-scoring domains: SM00320: domain 1 of 6, from 769 to 806: score 20.0, E = 0.34 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t + +l+gH ++ ++a +dg ll+s++ g++++W KIAA0199 769 TeIVPLVLRGHLM--DIECLA--SDG------MLLVSCClAGHVCVW 805 d<-* d KIAA0199 806 D 806 SM00320: domain 2 of 6, from 959 to 997: score 2.1, E = 2.3e+02 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl ++++ + + +g +++s+ + l+++g + g + + KIAA0199 959 KgSPSLAWApSAEG--SIWSLELQGN--------LIVVGRsSGRLEV 995 Wd<-* Wd KIAA0199 996 WD 997 SM00320: domain 3 of 6, from 1071 to 1109: score 19.2, E = 0.45 *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl l++t + +H++ p+t+++ +l++gs+D+t+r+ KIAA0199 1071 AcHLTHTVPcAHQK--PITALKAAAG--------RLVTGSqDHTLRV 1107 Wd<-* + KIAA0199 1108 FR 1109 SM00320: domain 4 of 6, from 1112 to 1150: score 40.5, E = 2.2e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ +l+tl+gH+g ++t+v ++++ +lasg++Dg i+lW KIAA0199 1112 DsCCLFTLQGHSG--AITTVYIDQT-------MVLASGGqDGAICLW 1149 d<-* d KIAA0199 1150 D 1150 SM00320: domain 5 of 6, from 1153 to 1190: score 18.5, E = 0.59 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ ++ +H+g +Vts++ + +++s++ D i +W KIAA0199 1153 TgSRVSHVFAHRG--DVTSLTCTTS--------CVISSGlDDLISIW 1189 d<-* d KIAA0199 1190 D 1190 SM00320: domain 6 of 6, from 1193 to 1230: score 4.7, E = 88 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd t+ ++++ g s+ + +d nll++g+ g++ +Wd KIAA0199 1193 TgIKFYSIQQDLG--CGASLGVISD-------NLLVTGGQGCVSFWD 1230 <-* KIAA0199 - - //