hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-20055658/chunk_1/iprscan-20080501-20055658.nocrc
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Query sequence: KIAA0199
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       103.1    7.4e-28   5
PF00400.22.fs WD domain, G-beta repeat                       100.3    2.6e-27   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6     770   806 ..     1    38 []    18.4  0.00032
PF00400.22.fs   3/6    1073  1109 ..     1    38 []    19.1   0.0002
PF00400.22.fs   4/6    1113  1150 ..     1    38 []    34.6    9e-09
PF00400.22.ls   4/5    1113  1150 ..     1    38 []    36.5  8.4e-08
PF00400.22.fs   5/6    1154  1190 ..     1    38 []    17.8  0.00049

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 770 to 806: score 18.4, E = 0.00032
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +  vl+gH   ++c+a +     ll+s++  g++++Wd   
    KIAA0199   770    EIVPlVLrGHLMDIECLASDGM---LLVSCCLAGHVCVWD    806  

PF00400.22.fs: domain 3 of 6, from 1073 to 1109: score 19.1, E = 0.0002
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          +v  +H++++t+++ +     +l++gS D+t++++    
    KIAA0199  1073    HLTHtVPcAHQKPITALKAAAG---RLVTGSQDHTLRVFR    1109 

PF00400.22.fs: domain 4 of 6, from 1113 to 1150: score 34.6, E = 9e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +c+ +l+gH++++t v +++    +lasg+ Dg i++Wd   
    KIAA0199  1113    SCCLfTLqGHSGAITTVYIDQT--MVLASGGQDGAICLWD    1150 

PF00400.22.ls: domain 4 of 5, from 1113 to 1150: score 36.5, E = 8.4e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +c+ +l+gH++++t v +++    +lasg+ Dg i++Wd   
    KIAA0199  1113    SCCLfTLqGHSGAITTVYIDQT--MVLASGGQDGAICLWD    1150 

PF00400.22.fs: domain 5 of 6, from 1154 to 1190: score 17.8, E = 0.00049
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g  +++  +H + Vt++ +  +   +++s++ D  i iWd   
    KIAA0199  1154    GSRVsHVfAHRGDVTSLTCTTS---CVISSGLDDLISIWD    1190 

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