hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-20042052/chunk_1/iprscan-20080501-20042052.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0198 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 148.0 1e-39 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/6 134 158 .. 1 23 [] 28.9 0.00067 SM00355 2/6 164 186 .. 1 23 [] 24.8 0.012 SM00355 3/6 193 215 .. 1 23 [] 24.4 0.016 SM00355 4/6 222 244 .. 1 23 [] 22.2 0.073 SM00355 5/6 257 279 .. 1 23 [] 24.5 0.015 SM00355 6/6 285 308 .. 1 23 [] 23.2 0.037 Alignments of top-scoring domains: SM00355: domain 1 of 6, from 134 to 158: score 28.9, E = 0.00067 *->ykCpi.gCgksfssk.aLkrHmrvH<-* y Cp+ Cgk f sk L rHm +H KIAA0198 134 YSCPQlHCGKAFASKyKLYRHMATH 158 SM00355: domain 2 of 6, from 164 to 186: score 24.8, E = 0.012 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + C+k f++k++L++H+++H KIAA0198 164 HQCMY-CDKMFHRKdHLRNHLQTH 186 SM00355: domain 3 of 6, from 193 to 215: score 24.4, E = 0.016 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk +++k ++rH+ +H KIAA0198 193 LHCSE-CGKNYNTKlGYRRHLAMH 215 SM00355: domain 4 of 6, from 222 to 244: score 22.2, E = 0.073 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C ++f s +aL +H++ H KIAA0198 222 LSCKV-CLQTFESTqALLEHLKAH 244 SM00355: domain 5 of 6, from 257 to 279: score 24.5, E = 0.015 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C+++f ++++ +rH+ vH KIAA0198 257 HPCDH-CDRRFYTRkDVRRHLVVH 279 SM00355: domain 6 of 6, from 285 to 308: score 23.2, E = 0.037 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C ++f +k++L+rH++++H KIAA0198 285 FLCQY-CAQRFGRKdHLTRHVKkSH 308 //