hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19591926/chunk_1/iprscan-20080501-19591926.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0195 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00122.10.fs E1-E2 ATPase 13.4 0.00066 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00122.10.fs 1/1 223 247 .. 38 63 .. 13.4 0.00066 Alignments of top-scoring domains: PF00122.10.fs: domain 1 of 1, from 223 to 247: score 13.4, E = 0.00066 *->lRdGgkeeeipaeeLvpGDiVevkpG<-* +RdG +++ +p++ Lv GDi+ ++pG KIAA0195 223 YRDG-HLVNLPVSLLVEGDIIALRPG 247 //