hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19524657/chunk_1/iprscan-20080501-19524657.nocrc
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Query sequence: KIAA0191
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00343                                                  79.2      5e-19   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00343      1/3     786   802 ..     1    17 []    23.8   0.0089
SM00343      2/3    1166  1182 ..     1    17 []    25.7   0.0045
SM00343      3/3    1230  1246 ..     1    17 []    29.7   0.0004

Alignments of top-scoring domains:
SM00343: domain 1 of 3, from 786 to 802: score 23.8, E = 0.0089
                   *->kCynCGkeGHiardCpk<-*
                      +C  C+k GH ++dCp+   
    KIAA0191   786    VCSICKKDGHSKNDCPE    802  

SM00343: domain 2 of 3, from 1166 to 1182: score 25.7, E = 0.0045
                   *->kCynCGkeGHiardCpk<-*
                       C+ CGk GH+++dCpk   
    KIAA0191  1166    CCRVCGKIGHYMKDCPK    1182 

SM00343: domain 3 of 3, from 1230 to 1246: score 29.7, E = 0.0004
                   *->kCynCGkeGHiardCpk<-*
                      +C+ CG  GH++r+Cp+   
    KIAA0191  1230    RCFICGDAGHVRRECPE    1246 

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