hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19524657/chunk_1/iprscan-20080501-19524657.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0191 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03828.9.ls Poly(A) polymerase 163.6 4.7e-46 2 PF03828.9.fs Poly(A) polymerase 160.0 5.6e-45 2 PF00098.13.ls Zinc knuckle 81.2 2.9e-21 3 PF00098.13.fs Zinc knuckle 75.3 6.8e-20 3 PF01909.13.fs Nucleotidyltransferase domain 42.5 5.4e-13 2 PF01909.13.ls Nucleotidyltransferase domain 46.1 1.1e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03828.9.ls 1/2 500 553 .. 1 67 [] 75.2 1.9e-19 PF03828.9.fs 1/2 500 553 .. 1 67 [] 73.4 2e-19 PF00098.13.ls 1/3 785 802 .. 1 18 [] 23.4 0.00013 PF00098.13.fs 1/3 785 802 .. 1 18 [] 21.4 9.1e-05 PF01909.13.fs 2/2 848 937 .. 1 117 [] 37.5 2.1e-11 PF01909.13.ls 2/2 848 937 .. 1 117 [] 39.3 1.3e-08 PF03828.9.fs 2/2 1056 1109 .. 1 67 [] 86.6 4.8e-23 PF03828.9.ls 2/2 1056 1109 .. 1 67 [] 88.4 2e-23 PF00098.13.ls 2/3 1165 1182 .. 1 18 [] 27.4 2.8e-05 PF00098.13.fs 2/3 1165 1182 .. 1 18 [] 25.4 7e-06 PF00098.13.ls 3/3 1229 1246 .. 1 18 [] 30.5 5.5e-06 PF00098.13.fs 3/3 1229 1246 .. 1 18 [] 28.5 9.2e-07 Alignments of top-scoring domains: PF03828.9.ls: domain 1 of 2, from 500 to 553: score 75.2, E = 1.9e-19 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr +LG+L+le++++Y++ F ++++vI++r +++l++e k+w+k+r KIAA0191 500 SLGQLWLELLKFYTL-DFALEEYVICVR---IQDILTRENKNWPKRR 542 vlnnrrpspLcIeDPfdtsn<-* ++IeDPf ++ KIAA0191 543 ---------IAIEDPFSVKR 553 PF03828.9.fs: domain 1 of 2, from 500 to 553: score 73.4, E = 2e-19 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr +LG+L+le++++Y++ F ++++vI++r +++l++e k+w+k+r KIAA0191 500 SLGQLWLELLKFYTL-DFALEEYVICVR---IQDILTRENKNWPKRR 542 vlnnrrpspLcIeDPfdtsn<-* ++IeDPf ++ KIAA0191 543 ---------IAIEDPFSVKR 553 PF00098.13.ls: domain 1 of 3, from 785 to 802: score 23.4, E = 0.00013 *->rkCynCGkpGHiardCpk<-* ++C C+k GH ++dCp+ KIAA0191 785 IVCSICKKDGHSKNDCPE 802 PF00098.13.fs: domain 1 of 3, from 785 to 802: score 21.4, E = 9.1e-05 *->rkCynCGkpGHiardCpk<-* ++C C+k GH ++dCp+ KIAA0191 785 IVCSICKKDGHSKNDCPE 802 PF01909.13.fs: domain 2 of 2, from 848 to 937: score 37.5, E = 2.1e-11 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd l ++++++++y+++a++ lfGS +G ++ SD+D++ +++++++ KIAA0191 848 LIGLEKFIQKEYDEKARLCLFGSSKNGFGFRD-SDLDICMTLEGHEN 893 eefalfslarlgkrikervkrleelaeiekeleellglevDlvtrekler +++++ +ei++ l ++l +++ l+ + ++ KIAA0191 894 -------------------AEKLNCKEIIENLAKILKRHPGLRNILPIT- 923 ilektaplvrreileervll<-* + ++++e+++ KIAA0191 924 ------TAKVPIVKFEHRRS 937 PF01909.13.ls: domain 2 of 2, from 848 to 937: score 39.3, E = 1.3e-08 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd l ++++++++y+++a++ lfGS +G ++ SD+D++ +++++++ KIAA0191 848 LIGLEKFIQKEYDEKARLCLFGSSKNGFGFRD-SDLDICMTLEGHEN 893 eefalfslarlgkrikervkrleelaeiekeleellglevDlvtrekler +++++ +ei++ l ++l +++ l+ + ++ KIAA0191 894 -------------------AEKLNCKEIIENLAKILKRHPGLRNILPIT- 923 ilektaplvrreileervll<-* + ++++e+++ KIAA0191 924 ------TAKVPIVKFEHRRS 937 PF03828.9.fs: domain 2 of 2, from 1056 to 1109: score 86.6, E = 4.8e-23 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr +LG+L+l+++++Y++ eFD++++vIsir q+++l+ ek+w++k KIAA0191 1056 SLGELWLGLLRFYTE-EFDFKEYVISIR---QKKLLTTFEKQWTSKC 1098 vlnnrrpspLcIeDPfdtsn<-* ++IeDPfd+++ KIAA0191 1099 ---------IAIEDPFDLNH 1109 PF03828.9.ls: domain 2 of 2, from 1056 to 1109: score 88.4, E = 2e-23 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr +LG+L+l+++++Y++ eFD++++vIsir q+++l+ ek+w++k KIAA0191 1056 SLGELWLGLLRFYTE-EFDFKEYVISIR---QKKLLTTFEKQWTSKC 1098 vlnnrrpspLcIeDPfdtsn<-* ++IeDPfd+++ KIAA0191 1099 ---------IAIEDPFDLNH 1109 PF00098.13.ls: domain 2 of 3, from 1165 to 1182: score 27.4, E = 2.8e-05 *->rkCynCGkpGHiardCpk<-* r C+ CGk GH+++dCpk KIAA0191 1165 RCCRVCGKIGHYMKDCPK 1182 PF00098.13.fs: domain 2 of 3, from 1165 to 1182: score 25.4, E = 7e-06 *->rkCynCGkpGHiardCpk<-* r C+ CGk GH+++dCpk KIAA0191 1165 RCCRVCGKIGHYMKDCPK 1182 PF00098.13.ls: domain 3 of 3, from 1229 to 1246: score 30.5, E = 5.5e-06 *->rkCynCGkpGHiardCpk<-* +C+ CG GH++r+Cp+ KIAA0191 1229 LRCFICGDAGHVRRECPE 1246 PF00098.13.fs: domain 3 of 3, from 1229 to 1246: score 28.5, E = 9.2e-07 *->rkCynCGkpGHiardCpk<-* +C+ CG GH++r+Cp+ KIAA0191 1229 LRCFICGDAGHVRRECPE 1246 //