hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19510990/chunk_1/iprscan-20080501-19510990.nocrc
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Query sequence: KIAA0190
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase          270.6    7.8e-87   1
PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase          272.4    8.1e-79   1
PF07145.5.fs Ataxin-2 C-terminal region                      23.3    7.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07145.5.fs   1/1      93   110 ..     1    18 []    23.3  7.2e-06
PF00443.19.fs   1/1     427   807 ..     1   318 []   270.6  7.8e-87
PF00443.19.ls   1/1     427   807 ..     1   318 []   272.4  8.1e-79

Alignments of top-scoring domains:
PF07145.5.fs: domain 1 of 1, from 93 to 110: score 23.3, E = 7.2e-06
                   *->kkkskLNPnAkEFVPssk<-*
                      +++s+LNP+A+EF+ +++   
    KIAA0190    93    SISSTLNPQAPEFILGCT    110  

PF00443.19.fs: domain 1 of 1, from 427 to 807: score 270.6, E = 7.8e-87
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                       +p+GL+N GN+CY+N++LQ+L+++pp+ + ++ ++ +s +   +++
    KIAA0190   427    LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKV---QRP 470  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx              xxx
                   gskgsllcaladLfnalqsg.yksvapsplkfl..............kqf
                   + ++ +  ++ +L+n++++++ +++++  l +   ++ +++   ++++++
    KIAA0190   471 CTSTPMIDSFVRLMNEFTNMpVPPKPRQALGDKivrdirpgaafeptYIY 520  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  
                   kltlgkineefsgymQQDAhEFllfLLdgLhedlnrvnkkpytepess..
                   +l+   ++++ ++++Q+DA+E+l f+L+gLhe++  ++k    ++e+++ 
    KIAA0190   521 RLLTVNKSSLSEKGRQEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLti 570  

                RF                    xxxxx xxx xxxxxxxxxxxxxxxxxxxxx
                   ...................dkrpd.kaa.eawknhltrnesiitdlFqGq
                   ++++++++ +++++++++++++++ ++++  +k + tr+ ++++++ +G+
    KIAA0190   571 sngpknhsvneeeqeeqgeGSEDEwEQVgPRNKTSVTRQADFVQTPITGI 620  

                RF xxx                                               
                   lks...............................................
                   +  + ++   +++++++ + ++  + + + ++++ ++ ++  ++   +++
    KIAA0190   621 FGGhirsvvyqqsskesatlqpfftlqldiqsdkirtvqdaleslvares 670  

                RF                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ................klkikrLPpvLiihLKRFsyngetglnkKiddkV
                    ++ +++++++ + ++++++ +LPpvL++hLKRF y+ + g ++K+ +++
    KIAA0190   671 vqgyttktkqeveisrRVTLEKLPPVLVLHLKRFVYEKT-GGCQKLIKNI 719  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   efPleLdlssycnaelkekevlrkdekieklkeerqrdedgnneeepeee
                   e+P  L +s +++++  ++                               
    KIAA0190   720 EYPVDLEISKELLSPGVKN------------------------------- 738  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   edneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDe
                       +  +++++Y+L+aVv+H+G+s+++GHY++++   ++ ++W+++DD+
    KIAA0190   739 ----KNFKCHRTYRLFAVVYHHGNSATGGHYTTDVF-QIGLNGWLRIDDQ 783  

                RF xxxxxxxxxxxx  xxxxxxxxxx   
                   kVsevteeevle..rsssAYiLFY<-*
                   +V+++++++v +++  ++AY+L+Y   
    KIAA0190   784 TVKVINQYQVVKptAERTAYLLYY    807  

PF00443.19.ls: domain 1 of 1, from 427 to 807: score 272.4, E = 8.1e-79
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                       +p+GL+N GN+CY+N++LQ+L+++pp+ + ++ ++ +s +   +++
    KIAA0190   427    LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKV---QRP 470  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxx              xxx
                   gskgsllcaladLfnalqsg.yksvapsplkfl..............kqf
                   + ++ +  ++ +L+n++++++ +++++  l +   ++ +++   ++++++
    KIAA0190   471 CTSTPMIDSFVRLMNEFTNMpVPPKPRQALGDKivrdirpgaafeptYIY 520  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  
                   kltlgkineefsgymQQDAhEFllfLLdgLhedlnrvnkkpytepess..
                   +l+   ++++ ++++Q+DA+E+l f+L+gLhe++  ++k    ++e+++ 
    KIAA0190   521 RLLTVNKSSLSEKGRQEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLti 570  

                RF                    xxxxx xxx xxxxxxxxxxxxxxxxxxxxx
                   ...................dkrpd.kaa.eawknhltrnesiitdlFqGq
                   ++++++++ +++++++++++++++ ++++  +k + tr+ ++++++ +G+
    KIAA0190   571 sngpknhsvneeeqeeqgeGSEDEwEQVgPRNKTSVTRQADFVQTPITGI 620  

                RF xxx                                               
                   lks...............................................
                   +  + ++   +++++++ + ++  + + + ++++ ++ ++  ++   +++
    KIAA0190   621 FGGhirsvvyqqsskesatlqpfftlqldiqsdkirtvqdaleslvares 670  

                RF                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ................klkikrLPpvLiihLKRFsyngetglnkKiddkV
                    ++ +++++++ + ++++++ +LPpvL++hLKRF y+ + g ++K+ +++
    KIAA0190   671 vqgyttktkqeveisrRVTLEKLPPVLVLHLKRFVYEKT-GGCQKLIKNI 719  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   efPleLdlssycnaelkekevlrkdekieklkeerqrdedgnneeepeee
                   e+P  L +s +++++  ++                               
    KIAA0190   720 EYPVDLEISKELLSPGVKN------------------------------- 738  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   edneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDe
                       +  +++++Y+L+aVv+H+G+s+++GHY++++   ++ ++W+++DD+
    KIAA0190   739 ----KNFKCHRTYRLFAVVYHHGNSATGGHYTTDVF-QIGLNGWLRIDDQ 783  

                RF xxxxxxxxxxxx  xxxxxxxxxx   
                   kVsevteeevle..rsssAYiLFY<-*
                   +V+++++++v +++  ++AY+L+Y   
    KIAA0190   784 TVKVINQYQVVKptAERTAYLLYY    807  

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