# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha03225.fasta.huge -Q ../query/KIAA0190.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0190, 813 aa vs ./tmplib.23147 library 1986692 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.1658+/-0.00701; mu= 7.4636+/- 0.474 mean_var=237.8868+/-59.281, 0's: 0 Z-trim: 4 B-trim: 134 in 1/39 Lambda= 0.083155 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0055 ( 1120 res) ha01049 (1120) 271 46.2 2.3e-05 KIAA0891 ( 1371 res) hk08201 (1371) 233 41.8 0.00061 KIAA0529 ( 952 res) hg02898s1 ( 952) 221 40.1 0.0013 >>KIAA0055 ( 1120 res) ha01049 (1120 aa) initn: 270 init1: 87 opt: 271 Z-score: 188.2 bits: 46.2 E(): 2.3e-05 Smith-Waterman score: 437; 25.649% identity (51.948% similar) in 616 aa overlap (214-807:565-1108) 190 200 210 220 230 240 KIAA01 DSISTEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPR--TCNSPQNSTDSVSDIVPDS : :: : : .:. . :..: :: . KIAA00 AKKEDKETSAKRGKEITGVKRQSKSEHETSDAKKSVEDRGKRCPTPEIQKKSTGD-VPHT 540 550 560 570 580 590 250 260 270 280 290 KIAA01 PFPGALGSDT--RTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGV : :: . ::::.: . . : : :: : .: . . . : . KIAA00 SVTGDSGSGKPFKIKGQPESGI---LRTGTF-REDTDDTERNKAQREPLTRARSEEMGRI 600 610 620 630 640 300 310 320 330 340 350 KIAA01 ANGQILESSGEGTATNGVE-----LHT-TESIDLDPTK--PESASPPADGTGSASGTLPV . : :: . . . :. :... . : . : :: : . : .:. .:. KIAA00 VPGL---PSGWAKFLDPITGTFRYYHSPTNTVHMYPPEMAPSSAPPSTPPTHKAKPQIPA 650 660 670 680 690 700 360 370 380 390 400 KIAA01 SQPKSWASLFHDSKPSSSSP---VAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVA . . ..: : : ::: : : . :...: :.. : : : .: .. KIAA00 ERDREPSKL----KRSYSSPDITQAIQEEEKRKPTVTPTVNR---ENKPTCYPKAE--IS 710 720 730 740 750 410 420 430 440 450 460 KIAA01 IKIAELLENVTLIHKPVSLQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQ : ..:.. . . :: : :: ::.:. :: : : :: .. . : KIAA00 RLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAP---HLADYFN-RNCYQ 760 770 780 790 800 810 470 480 490 500 510 520 KIAA01 RPCTSTPMIDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKS . . .. .. .:: . .:: : : : :. .:..: KIAA00 DDINRSNLLGHKGEVAEEFGII------MKALWTGQYRYISP-KDFK-------ITIGKI 820 830 840 850 530 540 550 560 570 580 KIAA01 SLSEKGR-QEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQ . . : :.:..: : :...::::. :. ... : .. ..... .. KIAA00 NDQFAGYSQQDSQELLLFLMDGLHED--------------LNKADNRKRYKEENNDHLDD 860 870 880 890 900 590 600 610 620 630 640 KIAA01 GEGSEDEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSS-KESATLQPFFTL ...: :. .. .. .. :...: :...:.: . :.: :.. :. : KIAA00 FKAAEHAWQ-----------KHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYL 910 920 930 940 950 650 660 670 680 690 700 KIAA01 QLDIQSDKIRTVQDALESLVARESVQG----YTTKTKQEVEISRRVTLEKLPPVLVLHLK .: . : . :.:: :. . .:.. : .. . . . ... . ::::::..::: KIAA00 SLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLK 960 970 980 990 1000 1010 710 720 730 740 750 760 KIAA01 RFVYEKTGGCQKLIKNIEYPVD-LEISKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSAT :: :. ::: ....:.. :..:. ...: :: :.: : ::.: :.:. KIAA00 RFSYDGRWK-QKLQTSVDFPLENLDLSQYVIGP--KN-NLK---KYNLFSVSNHYGG-LD 1020 1030 1040 1050 1060 770 780 790 800 810 KIAA01 GGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRVDLL :::::. . . . :...::. :. :. . :: .: ::.:.: KIAA00 GGHYTAYCKNAARQRWFKFDDHEVSDIS-VSSVKSSA---AYILFYTSLGPRVTDVAT 1070 1080 1090 1100 1110 1120 >>KIAA0891 ( 1371 res) hk08201 (1371 aa) initn: 250 init1: 109 opt: 233 Z-score: 162.7 bits: 41.8 E(): 0.00061 Smith-Waterman score: 233; 35.417% identity (63.194% similar) in 144 aa overlap (674-809:1133-1266) 650 660 670 680 690 700 KIAA01 FTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKR : . ::. : :... : .:: ::...::: KIAA08 GEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLWRLPNVLIVQLKR 1110 1120 1130 1140 1150 1160 710 720 730 740 750 760 KIAA01 FVYEKTGGCQKLIKNIEYPV-DLEISKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATG : ... .:. .:.:: .:..:: . : :.... .: :.::. :.:. : KIAA08 FSFRSFIWRDKINDLVEFPVRNLDLSKFCI--GQKEEQLP---SYDLYAVINHYGG-MIG 1170 1180 1190 1200 1210 770 780 790 800 810 KIAA01 GHYTTDVF-------QIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRVDLL ::::. . : . :: .::.:: .... ::: : ::.:.::: KIAA08 GHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVT----RYAYVLFYRRRNSPVE 1220 1230 1240 1250 1260 1270 KIAA08 RPPRAGHSEHHPDLGPAAEAAASQASRIWQELEAEEEPVPEGSGPLGPWGPQDWVGPLPR 1280 1290 1300 1310 1320 1330 >>KIAA0529 ( 952 res) hg02898s1 (952 aa) initn: 288 init1: 106 opt: 221 Z-score: 156.6 bits: 40.1 E(): 0.0013 Smith-Waterman score: 246; 31.447% identity (66.667% similar) in 159 aa overlap (658-811:759-905) 630 640 650 660 670 680 KIAA01 VVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQG----YTTKTKQEVE ..: .: ....:.. . : . :.. . KIAA05 KKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQ 730 740 750 760 770 780 690 700 710 720 730 740 KIAA01 ISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPV-DLEISKELLSPGVKNKNFK .... : .::::::.::::: : . .:: ...:. ::..:. :..:.. KIAA05 ATKKLDLWSLPPVLVVHLKRFSYSRYMR-DKLDTLVDFPINDLDMSEFLINPNAG----P 790 800 810 820 830 840 750 760 770 780 790 800 KIAA01 CHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTA :. : :.:: :.:. . :::::. . . . : .::..:.. .. :.:. ..: KIAA05 CR--YNLIAVSNHYGGMG-GGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVS----KAA 850 860 870 880 890 810 KIAA01 YLLYYRRVDLL :.:.:.: : KIAA05 YVLFYQRQDTFSGTGFFPLDRETKGASAATGIPLESDEDSNDNDNDIENENCMHTN 900 910 920 930 940 950 813 residues in 1 query sequences 1986692 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:58 2008 done: Thu Dec 18 15:10:59 2008 Total Scan time: 0.610 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]