hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19461847/chunk_1/iprscan-20080501-19461847.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0187
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04950.3.ls Protein of unknown function (DUF663)           413.7   2.5e-121   1
PF04950.3.fs Protein of unknown function (DUF663)           411.8   9.2e-121   1
PF08142.2.ls AARP2CN (NUC121) domain                        183.9    3.7e-52   1
PF08142.2.fs AARP2CN (NUC121) domain                        181.9    8.4e-52   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08142.2.fs   1/1     234   320 ..     1    88 []   181.9  8.4e-52
PF08142.2.ls   1/1     234   320 ..     1    88 []   183.9  3.7e-52
PF04950.3.fs   1/1     814  1107 ..     1   326 []   411.8 9.2e-121
PF04950.3.ls   1/1     814  1107 ..     1   326 []   413.7 2.5e-121

Alignments of top-scoring domains:
PF08142.2.fs: domain 1 of 1, from 234 to 320: score 181.9, E = 8.4e-52
                   *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg
                      Ei+NL+Rfi+vmK+RpltW++s+pY+LaDr+ed+t+pe+i+++ k++
    KIAA0187   234    EIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCD 280  

                   rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-*
                   r+v++y Gy+RG++L++ +++H+pGvGDF +s+i++lpDPc   
    KIAA0187   281 RKVSLY-GYLRGAHLKNKSQIHMPGVGDFAVSDISFLPDPC    320  

PF08142.2.ls: domain 1 of 1, from 234 to 320: score 183.9, E = 3.7e-52
                   *->EilNLlRfisvmKpRpltWRdsRpYlLaDrvedvtspeeieespkvg
                      Ei+NL+Rfi+vmK+RpltW++s+pY+LaDr+ed+t+pe+i+++ k++
    KIAA0187   234    EIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEDIRTNIKCD 280  

                   rlvavyKGyVRGtgLnvnrlVHIpGvGDFqiskiealpDPc<-*
                   r+v++y Gy+RG++L++ +++H+pGvGDF +s+i++lpDPc   
    KIAA0187   281 RKVSLY-GYLRGAHLKNKSQIHMPGVGDFAVSDISFLPDPC    320  

PF04950.3.fs: domain 1 of 1, from 814 to 1107: score 411.8, E = 9.2e-121
                   *->DEvelppdvparer.faKYrGLkSfrtSpWDpnElkDpnlPndyari
                      +E++  ++++a   ++ K+r+Lk  +++++D+ E           + 
    KIAA0187   814    EEIDPDEEESAKKKhLDKKRKLKEMFDAEYDEGE----------STY 850  

                   fqfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknV
                   f + + + +K+  ln +    E+e  d e++ + eg++pG yVr+ei+nV
    KIAA0187   851 FDDLKGEMQKQAQLNRA----EFEDQDDEARVQYEGFRPGMYVRIEIENV 896  

                   PkelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkS
                   P e+++nf++    + pi i++gL   E ++++v++++kkhrwykk+lkS
    KIAA0187   897 PCEFVQNFDP---HY-PI-ILGGLGNSEGNVGYVQMRLKKHRWYKKILKS 941  

                   kepLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGP
                    +p+i++vG+RRFq++P+y +   ++ n ++++++Y+p h++c A+f+GP
    KIAA0187   942 RDPIIFSVGWRRFQTIPLYYI---EDHNGRQRLLKYTPQHMHCGAAFWGP 988  

                   itfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvL
                   it++++++la++ v+           fr+aAtG +l+ d++++I+Kkl+L
    KIAA0187   989 ITPQGTGFLAIQSVSGIMP------DFRIAATGVVLDLDKSIKIVKKLKL 1032 

                   tGhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeal
                   tG+PyKIfK+t f++ MF+++++V++F+    ++ ++T+sG+rG+IK+al
    KIAA0187  1033 TGFPYKIFKNTSFIKGMFNSALEVAKFE----GAVIRTVSGIRGQIKKAL 1078 

                   sgthFGyfKAtFdgkinmqDiVimsLYkRV<-*
                     ++ G+f+A+F++k++m+DiV+m+++++V   
    KIAA0187  1079 RAPE-GAFRASFEDKLLMSDIVFMRTWYPV    1107 

PF04950.3.ls: domain 1 of 1, from 814 to 1107: score 413.7, E = 2.5e-121
                   *->DEvelppdvparer.faKYrGLkSfrtSpWDpnElkDpnlPndyari
                      +E++  ++++a   ++ K+r+Lk  +++++D+ E           + 
    KIAA0187   814    EEIDPDEEESAKKKhLDKKRKLKEMFDAEYDEGE----------STY 850  

                   fqfqNykntKkrilnekyiFREtekldveeekriegvkpGsyVrleiknV
                   f + + + +K+  ln +    E+e  d e++ + eg++pG yVr+ei+nV
    KIAA0187   851 FDDLKGEMQKQAQLNRA----EFEDQDDEARVQYEGFRPGMYVRIEIENV 896  

                   PkelaenfnsvnpkqmpiFivfgLLphEeKmsvvnfkikkhrwykkplkS
                   P e+++nf++    + pi i++gL   E ++++v++++kkhrwykk+lkS
    KIAA0187   897 PCEFVQNFDP---HY-PI-ILGGLGNSEGNVGYVQMRLKKHRWYKKILKS 941  

                   kepLiiqvGfRRFqanPiySqPgsntsndkhKyeRYlpphktcvATfYGP
                    +p+i++vG+RRFq++P+y +   ++ n ++++++Y+p h++c A+f+GP
    KIAA0187   942 RDPIIFSVGWRRFQTIPLYYI---EDHNGRQRLLKYTPQHMHCGAAFWGP 988  

                   itfpnspvlafkkvkssdsEnfrqngfrlaAtGsilevdpnriIlKklvL
                   it++++++la++ v+           fr+aAtG +l+ d++++I+Kkl+L
    KIAA0187   989 ITPQGTGFLAIQSVSGIMP------DFRIAATGVVLDLDKSIKIVKKLKL 1032 

                   tGhPyKIfKktafvRyMFfnreDVewFkCCvqpvplfTksGrrGhIKeal
                   tG+PyKIfK+t f++ MF+++++V++F+    ++ ++T+sG+rG+IK+al
    KIAA0187  1033 TGFPYKIFKNTSFIKGMFNSALEVAKFE----GAVIRTVSGIRGQIKKAL 1078 

                   sgthFGyfKAtFdgkinmqDiVimsLYkRV<-*
                     ++ G+f+A+F++k++m+DiV+m+++++V   
    KIAA0187  1079 RAPE-GAFRASFEDKLLMSDIVFMRTWYPV    1107 

//