# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02920.fasta.huge -Q ../query/KIAA0187.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0187, 1285 aa vs ./tmplib.23147 library 1986220 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.3872+/-0.00732; mu= -0.7243+/- 0.493 mean_var=223.9679+/-53.420, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.085700 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1401 ( 853 res) hk09639 ( 853) 397 63.1 2.3e-10 >>KIAA1401 ( 853 res) hk09639 (853 aa) initn: 489 init1: 165 opt: 397 Z-score: 277.9 bits: 63.1 E(): 2.3e-10 Smith-Waterman score: 399; 22.840% identity (54.527% similar) in 486 aa overlap (639-1115:381-830) 610 620 630 640 650 660 KIAA01 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK--- : ..:.:. :: . . ..:. ... KIAA14 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP 360 370 380 390 400 410 670 680 690 700 710 720 KIAA01 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV : : . . :. ::.... . ..:. :: . . : : :: KIAA14 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG 420 430 440 450 460 730 740 750 760 770 780 KIAA01 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE .. : ... :... :. : .: . :: :.. .. . : KIAA14 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES 470 480 490 500 790 800 810 820 830 840 KIAA01 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA .. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . . KIAA14 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS 510 520 530 540 550 560 850 860 870 880 890 900 KIAA01 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF .: :. : . ..:. .. .. :.. ... . :: . : :: ... .:: KIAA14 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV 570 580 590 600 610 910 920 930 940 950 960 KIAA01 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY :. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::. KIAA14 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF 620 630 640 650 660 670 970 980 990 1000 1010 KIAA01 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD . ...: .. : :. ..::: : .. .: :. .:. . ::: ... KIAA14 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS 680 690 700 710 720 730 1020 1030 1040 1050 1060 1070 KIAA01 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR .: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. : KIAA14 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL- 740 750 760 770 780 790 1080 1090 1100 1110 1120 1130 KIAA01 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR . .: .. ::. :: .: :.: . : :.: KIAA14 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME 800 810 820 830 840 850 1140 1150 1160 1170 1180 1190 KIAA01 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP 1285 residues in 1 query sequences 1986220 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:51 2008 done: Thu Dec 18 15:10:52 2008 Total Scan time: 0.780 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]