# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02920.fasta.huge -Q ../query/KIAA0187.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA0187, 1285 aa
vs ./tmplib.23147 library
1986220 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 8.3872+/-0.00732; mu= -0.7243+/- 0.493
mean_var=223.9679+/-53.420, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40
Lambda= 0.085700
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 40, opt: 28, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA1401 ( 853 res) hk09639 ( 853) 397 63.1 2.3e-10
>>KIAA1401 ( 853 res) hk09639 (853 aa)
initn: 489 init1: 165 opt: 397 Z-score: 277.9 bits: 63.1 E(): 2.3e-10
Smith-Waterman score: 399; 22.840% identity (54.527% similar) in 486 aa overlap (639-1115:381-830)
610 620 630 640 650 660
KIAA01 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
: ..:.:. :: . . ..:. ...
KIAA14 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
360 370 380 390 400 410
670 680 690 700 710 720
KIAA01 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
: : . . :. ::.... . ..:. :: . . : : ::
KIAA14 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
420 430 440 450 460
730 740 750 760 770 780
KIAA01 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
.. : ... :... :. : .: . :: :.. .. . :
KIAA14 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
470 480 490 500
790 800 810 820 830 840
KIAA01 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
KIAA14 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
510 520 530 540 550 560
850 860 870 880 890 900
KIAA01 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
KIAA14 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
570 580 590 600 610
910 920 930 940 950 960
KIAA01 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
KIAA14 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
620 630 640 650 660 670
970 980 990 1000 1010
KIAA01 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
KIAA14 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
680 690 700 710 720 730
1020 1030 1040 1050 1060 1070
KIAA01 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
KIAA14 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
740 750 760 770 780 790
1080 1090 1100 1110 1120 1130
KIAA01 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
. .: .. ::. :: .: :.: . : :.:
KIAA14 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
800 810 820 830 840 850
1140 1150 1160 1170 1180 1190
KIAA01 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
1285 residues in 1 query sequences
1986220 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:10:51 2008 done: Thu Dec 18 15:10:52 2008
Total Scan time: 0.780 Total Display time: 0.030
Function used was FASTA [version 34.26.5 April 26, 2007]