# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02726.fasta.huge -Q ../query/KIAA0183.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0183, 1111 aa vs ./tmplib.23147 library 1986394 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.1668+/-0.00873; mu= 4.1965+/- 0.591 mean_var=310.4921+/-75.225, 0's: 0 Z-trim: 3 B-trim: 8 in 1/39 Lambda= 0.072786 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1838 ( 917 res) fh26155(revised) ( 917) 340 50.2 1.6e-06 >>KIAA1838 ( 917 res) fh26155(revised) (917 aa) initn: 644 init1: 231 opt: 340 Z-score: 209.0 bits: 50.2 E(): 1.6e-06 Smith-Waterman score: 731; 24.186% identity (53.488% similar) in 860 aa overlap (2-809:16-826) 10 20 30 40 KIAA01 DYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNC .. . :: . :....::. :.. : ..::: : KIAA18 ILSRSSVMGVRGLQGFVGSTCPHICTVVNFKELAEHH-----RSKYPGCTPTIVVDAMCC 10 20 30 40 50 50 60 70 80 90 100 KIAA01 LHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQG :. : .:. :::: .... : ..:. ...:.:. ::.: .:. . :::::. KIAA18 LRYWYTP--ESWICGGQWREYFSALRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRL 60 70 80 90 100 110 110 120 130 140 150 160 KIAA01 NERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSIEDHHQEVIGF .. . ..: ..... : . :. : .: :.:: . .. :... :: .. KIAA18 KNNREISRIFHYIKSHKEQPGRNMFFIPSGLAVFTRFALKTLGQETLCSLQEADYEVASY 120 130 140 150 160 170 170 180 190 200 210 220 KIAA01 CRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRF ... :... :.:: . . ::: : : .:: : . ... ..: : . KIAA18 GLQHNCLGILGEDTDYLIYDTCPYFSISELCL----ESLDTVMLCREKLCESLGLCVADL 180 190 200 210 220 230 240 250 260 270 280 KIAA01 PIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYV--R :..: :::: :.:. . ::... :. . . ...: : . :.. : . KIAA18 PLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVSDHISKVLYLYQGEK 230 240 250 260 270 280 290 300 310 320 330 KIAA01 NIQDTSDLD--------AIAKDVFQHSQS----RTDDKVIRFKRAIGYYSATSKPMSFHP .... : ..:. .. ..: . :: . . . :..: : . KIAA18 KLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQV--ISTSSDAESREE 290 300 310 320 330 340 340 350 360 370 380 KIAA01 PHYLAARPGPFGMPGMVPPH----VPPQMLNIP--QTSLQAKPVAPQ-VPSPGGAPGQGP . . . .: . :. :: . : .. . . : : ::. : .. KIAA18 VPMCSDAESRQEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRRE 350 360 370 380 390 400 390 400 410 420 430 440 KIAA01 YPYSLSEPAP---LTLDTSGKNLTEQNSYSNIPHEGKHTPLYERSSPIN--PAQSGSPNH :. :.: : . . :. . : :.. . ...:.: : : . : .:: . KIAA18 VPMC-SDPEPRQEVPMCTGPEARQEVPMYTD-SEPRQEVPMYTDSEPRQEVPMYTGSEPR 410 420 430 440 450 460 450 460 470 480 490 KIAA01 VDSAYFPGSSTSSSSDNDEGSGGATNHISGNKIGWEKTGSHSEPQARGD---PGDQTKAE . .. : : .. .: . ... ...:..: . : ..: : KIAA18 QEVPMYTGP--ESRQEVPMYTGPESR---------QEVLIRTDPESRQEIMCTGHESKQE 470 480 490 500 510 500 510 520 530 540 KIAA01 GSSTASSGSQLAEGKGSQMGTVQPIPCLLSMPTRNHMDITTPPL----PP--VAPEV--- .. :. .. .. : .: .. . . . : : : :.::: KIAA18 VPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMCTNPEIKQEDPTNVGPEVKQQ 520 530 540 550 560 570 550 560 570 580 590 KIAA01 ---------LRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVR :.::. .: .. : .......:::. . ..::: .. :: :..:::.: KIAA18 VTMVSDTEILKVARTHHVQAESY-LVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIR 580 590 600 610 620 630 600 610 620 630 640 650 KIAA01 QYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPVIIKEWAAYKGKSPQTPELVEALAFR- : ::..:. .. .: . .::: .: :. . :.::. : . KIAA18 QRVYSLLLEDCQDVTSTC---------------LAVKEWFVYPGNPLRHPDLVRPLQMTI 640 650 660 670 660 670 680 690 700 710 KIAA01 EWTCPNLKRLWLGKAVEDKNRRMRAFLACMR-SDTPAMLNPANVPTHLMVLCCVLRYM-V :.:: :::.. : . ::. ..:::. :.. :. .. : ...:::.: :. : KIAA18 PGGTPSLKILWLNQEPEIQVRRLDTLLACFNLSSSREELQAVESP--FQALCCLLIYLFV 680 690 700 710 720 730 720 730 740 750 760 770 KIAA01 QWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFA : . : ..: ::.:::: . .:: .:. . ..::..::..:.. :. ... KIAA18 Q---VDTLCLEDLHAFIAQALCLQGKSTSQLVNLQPDYINPRAVQLGSLLVRGLTTLVLV 740 750 760 770 780 790 780 790 800 810 820 830 KIAA01 NDACGQPIPWEHC--CPWMYFDGKLFQSKLLKASREKTPLIDLCDGQADQAAKVEKMRQS :.::: .::. :: ::::::..: :.. . KIAA18 NSACG--FPWKTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLEQNRSRLTKFHNLKAVV 800 810 820 830 840 850 840 850 860 870 880 890 KIAA01 VLEGLSFSRQSHTLPFPPPPALPFYPASAYPRHFGPVPPSQGRGRGFAGVCGFGGPYGET KIAA18 CKACMKENRRITGRAHWGSHHAGRWGRQGSSYHRTGSGYSRSSQGQPWRDQGPGSRQYEH 860 870 880 890 900 910 1111 residues in 1 query sequences 1986394 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:42 2008 done: Thu Dec 18 15:10:43 2008 Total Scan time: 0.710 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]