hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19295076/chunk_1/iprscan-20080501-19295076.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0177 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00644.10.ls Poly(ADP-ribose) polymerase catalytic domain 237.1 3.4e-68 1 PF00644.10.fs Poly(ADP-ribose) polymerase catalytic domain 235.3 1.2e-67 1 PF08487.1.ls Vault protein inter-alpha-trypsin 184.7 2.2e-52 1 PF08487.1.fs Vault protein inter-alpha-trypsin 182.7 8.4e-52 1 PF00092.18.fs von Willebrand factor type A domain 59.2 1.7e-18 1 PF00533.16.fs BRCA1 C Terminus (BRCT) domain 60.3 7.1e-17 1 PF00533.16.ls BRCA1 C Terminus (BRCT) domain 62.1 1.6e-15 1 PF00092.18.ls von Willebrand factor type A domain 61.1 3.4e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00533.16.fs 1/1 2 82 .. 1 96 [] 60.3 7.1e-17 PF00533.16.ls 1/1 2 82 .. 1 96 [] 62.1 1.6e-15 PF00644.10.ls 1/1 379 567 .. 1 241 [] 237.1 3.4e-68 PF00644.10.fs 1/1 379 567 .. 1 241 [] 235.3 1.2e-67 PF08487.1.fs 1/1 620 737 .. 1 119 [] 182.7 8.4e-52 PF08487.1.ls 1/1 620 737 .. 1 119 [] 184.7 2.2e-52 PF00092.18.ls 1/1 877 1044 .. 1 195 [] 61.1 3.4e-15 PF00092.18.fs 1/1 877 1044 .. 1 195 [] 59.2 1.7e-18 Alignments of top-scoring domains: PF00533.16.fs: domain 1 of 1, from 2 to 82: score 60.3, E = 7.1e-17 *->p.eklfkgltfvi.tggldgfereeleleelieklGGkvtsslskkt + +f +++f+++ + l+++++++l + i+++GGk++ sl++++ KIAA0177 2 MvMGIFANCIFCLkVKYLPQQQKKKL--QTDIKENGGKFSFSLNPQC 46 thvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldc th+i ++ l+ ++++ ++i ++++++++ KIAA0177 47 THII--LDNA------------DVLSQYQ-LNSIQKNHVHIANPDFIWKS 81 i<-* i KIAA0177 82 I 82 PF00533.16.ls: domain 1 of 1, from 2 to 82: score 62.1, E = 1.6e-15 *->p.eklfkgltfvi.tggldgfereeleleelieklGGkvtsslskkt + +f +++f+++ + l+++++++l + i+++GGk++ sl++++ KIAA0177 2 MvMGIFANCIFCLkVKYLPQQQKKKL--QTDIKENGGKFSFSLNPQC 46 thvislvgepkypkieiifigsleagtskkllkakalgipivteeWlldc th+i ++ l+ ++++ ++i ++++++++ KIAA0177 47 THII--LDNA------------DVLSQYQ-LNSIQKNHVHIANPDFIWKS 81 i<-* i KIAA0177 82 I 82 PF00644.10.ls: domain 1 of 1, from 379 to 567: score 237.1, E = 3.4e-68 *->LkckklepLdkdSeEykmiekylknThapthggyeYsltivdIfrvq L+c k+e++++++eE+ ++ k+++++h+ ++ ++++++Ifrv KIAA0177 379 LRC-KIEHVEQNTEEFLRVRKEVLQNHH-SKS----PVDVLQIFRVG 419 rdgEadrFqphkkqlekkkglkNvnrrLLWHGSrltNfagILsqGLrIap r +E F + l+N +r L HGS ++N++gIL +GL+ + KIAA0177 420 RVNETTEFLSK---------LGN--VRPLLHGSPVQNIVGILCRGLLLPK 458 peaPvtGymTD.G.FGKGiYFAdmaSkSaDnYcptseangsglrSllgml + +++ ++TD G++G+GiYF+d +S S+ Y+++ e +g++l +l KIAA0177 459 VVEDRGVQRTDvGnLGSGIYFSDSLSTSI-KYSHPGETDGTRL-----LL 502 LseVALGdemneLtkadysaeklppgkhSvkGlGkttPawkdpsesfvdl +++VALG+ ++ L ++d+s++++ppg++Sv+G+++t+ KIAA0177 503 ICDVALGK-CMDLHEKDFSLTEAPPGYDSVHGVSQTAS------------ 539 DGvvvPlgklvptgykssvdytllynEYvVYdveQvrlkYLlevkf<-* v ++ ++ +E+vVY+++Qv++kY++++++ KIAA0177 540 ----VTTD--------------FEDDEFVVYKTNQVKMKYIIKFSM 567 PF00644.10.fs: domain 1 of 1, from 379 to 567: score 235.3, E = 1.2e-67 *->LkckklepLdkdSeEykmiekylknThapthggyeYsltivdIfrvq L+c k+e++++++eE+ ++ k+++++h+ ++ ++++++Ifrv KIAA0177 379 LRC-KIEHVEQNTEEFLRVRKEVLQNHH-SKS----PVDVLQIFRVG 419 rdgEadrFqphkkqlekkkglkNvnrrLLWHGSrltNfagILsqGLrIap r +E F + l+N +r L HGS ++N++gIL +GL+ + KIAA0177 420 RVNETTEFLSK---------LGN--VRPLLHGSPVQNIVGILCRGLLLPK 458 peaPvtGymTD.G.FGKGiYFAdmaSkSaDnYcptseangsglrSllgml + +++ ++TD G++G+GiYF+d +S S+ Y+++ e +g++l +l KIAA0177 459 VVEDRGVQRTDvGnLGSGIYFSDSLSTSI-KYSHPGETDGTRL-----LL 502 LseVALGdemneLtkadysaeklppgkhSvkGlGkttPawkdpsesfvdl +++VALG+ ++ L ++d+s++++ppg++Sv+G+++t+ KIAA0177 503 ICDVALGK-CMDLHEKDFSLTEAPPGYDSVHGVSQTAS------------ 539 DGvvvPlgklvptgykssvdytllynEYvVYdveQvrlkYLlevkf<-* v ++ ++ +E+vVY+++Qv++kY++++++ KIAA0177 540 ----VTTD--------------FEDDEFVVYKTNQVKMKYIIKFSM 567 PF08487.1.fs: domain 1 of 1, from 620 to 737: score 182.7, E = 8.4e-52 *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA n v++ +++++++++ +A+++V+++++N+++ ++Ea++++pl++kA KIAA0177 620 NLVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFPLDDKA 666 FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq +++ F+++Ingk++vGeIKeKeeAqq+Y +Av +G+ A+L++++ +d+ KIAA0177 667 AVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDV-- 714 FtvsVanVapnsKVtFeLtY.eE<-* FtvsV+n++p++KV +++tY +E KIAA0177 715 FTVSVGNLPPKAKVLIKITYiTE 737 PF08487.1.ls: domain 1 of 1, from 620 to 737: score 184.7, E = 2.2e-52 *->ngvtiySlkVnstVtSRfAhtvVtsrvvNradesqEalFdvplPkkA n v++ +++++++++ +A+++V+++++N+++ ++Ea++++pl++kA KIAA0177 620 NLVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFPLDDKA 666 FItnFtmtIngktyvGeIKeKeeAqqlYekAvarGksAgLVrtsgrdmEq +++ F+++Ingk++vGeIKeKeeAqq+Y +Av +G+ A+L++++ +d+ KIAA0177 667 AVCGFEAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDV-- 714 FtvsVanVapnsKVtFeLtY.eE<-* FtvsV+n++p++KV +++tY +E KIAA0177 715 FTVSVGNLPPKAKVLIKITYiTE 737 PF00092.18.ls: domain 1 of 1, from 877 to 1044: score 61.1, E = 3.4e-15 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY +++ lD+S+S+ + F ++k+ + ++ ++ V ++q+ KIAA0177 877 EVIICLDCSSSMEGVT-FLQAKEIALHALS----LVGEKQKVNIIQF 918 ssdvrtefsLndy.sskddllaavlknlrylgGgTnNtgkALkyalenlf ++ ++ fs ++ +s ++ ++ + + ++ G+T+ k L+y ++ KIAA0177 919 GTGYKELFSYPKHiTSNTAAAEFI-MSATPTMGNTD-FWKTLRYLSLLYP 966 sstMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgv ++gsR ++l++DG+ +d++++ + +++ r KIAA0177 967 ---------ARGSRN------ILLVSDGHLQDESLTLqLVKRSRP----- 996 gitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeq +fa G+G+ ++++ Lr ++ ++ +f+ ++++++ +i++q KIAA0177 997 HTRLFACGIGSTANRHILRiLSQCGAGVFEYFNAKSKHSWRK---QIEDQ 1043 l<-* + KIAA0177 1044 M 1044 PF00092.18.fs: domain 1 of 1, from 877 to 1044: score 59.2, E = 1.7e-18 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY +++ lD+S+S+ + F ++k+ + ++ ++ V ++q+ KIAA0177 877 EVIICLDCSSSMEGVT-FLQAKEIALHALS----LVGEKQKVNIIQF 918 ssdvrtefsLndy.sskddllaavlknlrylgGgTnNtgkALkyalenlf ++ ++ fs ++ +s ++ ++ + + ++ G+T+ k L+y ++ KIAA0177 919 GTGYKELFSYPKHiTSNTAAAEFI-MSATPTMGNTD-FWKTLRYLSLLYP 966 sstMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgv ++gsR ++l++DG+ +d++++ + +++ r KIAA0177 967 ---------ARGSRN------ILLVSDGHLQDESLTLqLVKRSRP----- 996 gitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeq +fa G+G+ ++++ Lr ++ ++ +f+ ++++++ +i++q KIAA0177 997 HTRLFACGIGSTANRHILRiLSQCGAGVFEYFNAKSKHSWRK---QIEDQ 1043 l<-* + KIAA0177 1044 M 1044 //