# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha03941.fasta.huge -Q ../query/KIAA0176.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0176, 265 aa
 vs ./tmplib.23147 library

1987240 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.5270+/-0.00809; mu= 2.2163+/- 0.549
 mean_var=249.2586+/-59.479, 0's: 0 Z-trim: 4  B-trim: 26 in 1/39
 Lambda= 0.081236

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1778  ( 341 res)   pg00707                     ( 341)  197 35.0  0.0054
KIAA1317  ( 435 res)   fh13117                     ( 435)  196 35.0  0.0068


>>KIAA1778  ( 341 res)   pg00707                          (341 aa)
 initn: 244 init1:  94 opt: 197  Z-score: 145.6  bits: 35.0 E(): 0.0054
Smith-Waterman score: 200;  35.000% identity (59.167% similar) in 120 aa overlap (62-167:25-143)

              40        50        60        70                     
KIAA01 GPPSPRPAGPTPRGHGRPAAAVAQRLEPGPGPPERAGGGGAA-------------RWVRL
                                     : :. .::::..               :.:
KIAA17       VQRGFLPLSRPGHLSVMALADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVEL
                     10        20        30        40        50    

       80        90       100       110       120       130        
KIAA01 NVGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLR
       ::::  .:: : :.   : :.: :.  :..:. .  .:  : ...:::   :  ::.:::
KIAA17 NVGGQVYVTRRCTVVSVPDSLLWRMFTQQQPQ-ELARDSKGRFFLDRDGFLFRYILDYLR
           60        70        80         90       100       110   

      140       150        160       170       180       190       
KIAA01 HGKLIITKELAEEGVLE-EAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEE
         .:..   . :.. :. :::....  :::                              
KIAA17 DLQLVLPDYFPERSRLQREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELL
           120       130       140       150       160       170   

>>KIAA1317  ( 435 res)   fh13117                          (435 aa)
 initn: 150 init1: 111 opt: 196  Z-score: 143.8  bits: 35.0 E(): 0.0068
Smith-Waterman score: 196;  30.061% identity (60.736% similar) in 163 aa overlap (76-231:34-190)

          50        60        70        80        90       100     
KIAA01 HGRPAAAVAQRLEPGPGPPERAGGGGAARWVRLNVGGTYFVTTRQTLGREPKSFLCRLCC
                                     :.:::::  . : ..::   :.:.: ..  
KIAA13 KKGTMALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFS
            10        20        30        40        50        60   

          110       120       130       140       150        160   
KIAA01 -QEDPELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLE-EAEFYNIA
        ..:   :  ::  : ..::::   :  ::.:::  ....  .. :.: :. :::.... 
KIAA13 PKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLP
            70        80        90       100       110       120   

           170        180       190       200         210          
KIAA01 SLVRLVK-ERIRDNENRTSQGPVKHVYRVLQCQEEELTQMVSTM-SD-GWKFEQLISIG-
       .::.:.  ..:... ..  ..  . .    : .. ..    : . .:  : :   :..: 
KIAA13 DLVKLLTPDEIKQSPDEFCHSDFEDAS---QGSDTRICPPSSLLPADRKWGF---ITVGY
           130       140       150          160       170          

      220       230       240       250       260                  
KIAA01 -SSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQERGSRM             
        .: . : : ::.                                               
KIAA13 RGSCTLGREGQADAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKF
       180       190       200       210       220       230       




265 residues in 1 query   sequences
1987240 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:26 2008 done: Thu Dec 18 15:10:26 2008
 Total Scan time:  0.310 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]