hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19250082/chunk_1/iprscan-20080501-19250082.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0174
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03398.5.ls Eukaryotic protein of unknown function, DUF2   259.8    5.1e-75   1
PF03398.5.fs Eukaryotic protein of unknown function, DUF2   257.9    1.9e-74   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03398.5.fs   1/1      22   144 ..     1   131 []   257.9  1.9e-74
PF03398.5.ls   1/1      22   144 ..     1   131 []   259.8  5.1e-75

Alignments of top-scoring domains:
PF03398.5.fs: domain 1 of 1, from 22 to 144: score 257.9, E = 1.9e-74
                   *->LainRLklLrnKkealakqlRReiAdLLasGkdarAriRVEhlIrEd
                      L+inRLklL++Kk++la+++R+eiAd+La+Gkd+rAriRVEh+IrEd
    KIAA0174    22    LVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIRED 68   

                   ilvealEiLelyCeLLlaRlgvIekqktEEqLvKeelpdgikEAvsSLif
                   +lvea+EiLelyC+LLlaR+g+I+++k        el++g++E+vs+Li+
    KIAA0174    69 YLVEAMEILELYCDLLLARFGLIQSMK--------ELDSGLAESVSTLIW 110  

                   AAprlssdipELrelrdlfvkKYGkeFaeaarel<-*
                   AAprl+s+++EL++++d++++KY+ke+++++r++   
    KIAA0174   111 AAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTN    144  

PF03398.5.ls: domain 1 of 1, from 22 to 144: score 259.8, E = 5.1e-75
                   *->LainRLklLrnKkealakqlRReiAdLLasGkdarAriRVEhlIrEd
                      L+inRLklL++Kk++la+++R+eiAd+La+Gkd+rAriRVEh+IrEd
    KIAA0174    22    LVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIRED 68   

                   ilvealEiLelyCeLLlaRlgvIekqktEEqLvKeelpdgikEAvsSLif
                   +lvea+EiLelyC+LLlaR+g+I+++k        el++g++E+vs+Li+
    KIAA0174    69 YLVEAMEILELYCDLLLARFGLIQSMK--------ELDSGLAESVSTLIW 110  

                   AAprlssdipELrelrdlfvkKYGkeFaeaarel<-*
                   AAprl+s+++EL++++d++++KY+ke+++++r++   
    KIAA0174   111 AAPRLQSEVAELKIVADQLCAKYSKEYGKLCRTN    144  

//