# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02512s1.fasta.huge -Q ../query/KIAA0172.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0172, 1366 aa vs ./tmplib.23147 library 1986139 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.8971+/-0.00847; mu= -7.2630+/- 0.573 mean_var=279.2252+/-65.574, 0's: 0 Z-trim: 17 B-trim: 5 in 1/39 Lambda= 0.076753 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1518 ( 876 res) sh00483 ( 876) 1101 136.3 2.2e-32 KIAA1223 ( 1089 res) pg00513 (1089) 257 42.9 0.00036 KIAA0379 ( 1059 res) hh00505s1 (1059) 248 41.9 0.0007 KIAA0396 ( 627 res) hg00180s1 ( 627) 234 40.2 0.0014 KIAA1636 ( 1864 res) ff02660 (1864) 238 41.0 0.0023 KIAA1250 ( 1777 res) pf01137 (1777) 227 39.8 0.0052 >>KIAA1518 ( 876 res) sh00483 (876 aa) initn: 1705 init1: 1026 opt: 1101 Z-score: 673.1 bits: 136.3 E(): 2.2e-32 Smith-Waterman score: 1101; 44.630% identity (73.508% similar) in 419 aa overlap (931-1346:447-862) 910 920 930 940 950 960 KIAA01 NPDFQKTSLGKITGNYLGYTCKCGGLQSGSPLSSQTSQPEQEVGTSEGKPISSLDAFPTQ : :..: : .::. : .: .: ::: KIAA15 PAAATSNVHMVKKISITERSCDGAAGLPEVPAESSSSPPGSEVA-SLTQPEKSTGRVPTQ 420 430 440 450 460 470 970 980 990 1000 1010 KIAA01 EGTLS-PVNLTDDQIAAGLYACTNNESTLKSIMKKKDGNKDSNGAKKNLQFVGINGGYET : : :. . .: . . . . ..::::.:. : .. ...:::::.:::::. KIAA15 EPTHREPTRQAASQESEEAGGTGGPPAGVRSIMKRKEEVADPTAHRRSLQFVGVNGGYES 480 490 500 510 520 530 1020 1030 1040 1050 1060 1070 KIAA01 TSSDDSSSDESSSSESDDECDVIEYPLEEEEE-EEDEDTRGMAEGHHAVNIEGLKSARVE ::.:::. :. :.... : .. : : :. : . : . . .. . . .: KIAA15 -SSEDSSTAENISDNNSTENEAPE-PRERVPSVAEAPQLRPAGTAAAKTSRQECQLSRES 540 550 560 570 580 590 1080 1090 1100 1110 1120 1130 KIAA01 DEMQVQE-CEPEKVEIRERYELSEKMLSACNLLKNTINDPKALTSKDMRFCLNTLQHEWF ... . : ..: . :.::: ..::: :.. ...:.::: .... .:. .::. KIAA15 QHIPTAEGASGSNTEEEIRMELSPDLISACLALEKYLDNPNALTERELKVAYTTVLQEWL 600 610 620 630 640 650 1140 1150 1160 1170 1180 1190 KIAA01 RVSSQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLD :.. ...: : .: ....:.:.: .: ::.:.::.::::::::::::.:: .:. ::: KIAA15 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD 660 670 680 690 700 710 1200 1210 1220 1230 1240 1250 KIAA01 ADVCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVS . ::.::.::.:::.::::.:::..... :.. : .:: :..::::::::::::::::: KIAA15 SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVS 720 730 740 750 760 770 1260 1270 1280 1290 1300 1310 KIAA01 HGRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGST :::.:.::.:::: ::::.:::.:::::::: :::: ::. :::: :.:. : : :::: KIAA15 HGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGST 780 790 800 810 820 830 1320 1330 1340 1350 1360 KIAA01 ALSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD :: .::.::...:: .::...:. . .: KIAA15 ALMVALDAGQSEIASMLYSRMNIKCSFAPMSDDESPTSSSAEE 840 850 860 870 >>KIAA1223 ( 1089 res) pg00513 (1089 aa) initn: 265 init1: 158 opt: 257 Z-score: 166.7 bits: 42.9 E(): 0.00036 Smith-Waterman score: 257; 33.735% identity (61.446% similar) in 166 aa overlap (1169-1334:330-493) 1140 1150 1160 1170 1180 1190 KIAA01 VSSQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDA .: ::..: ::: .. .. :::. ::: KIAA12 ADADSRTVLRAAAWGGHEDIVLNLLQHGAEVNKADNEGRTALIAAAYMGHREIVEHLLDH 300 310 320 330 340 350 1200 1210 1220 1230 1240 1250 KIAA01 DVCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSH . .:.:.. : : . .::: . .. .: :. : . .. :.: :..:. . KIAA12 GA-EVNHEDVDGRTALSVAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYE 360 370 380 390 400 410 1260 1270 1280 1290 1300 1310 KIAA01 GRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGSTA :..:.: :: ::::. :..: : :. :. ::. .:. :: : :..: :. KIAA12 GHVDVVDLLLEGGADVDHTDNNGRTPLLAAASMGHASVVNTLLFW-GAAVDSIDSEGRTV 420 430 440 450 460 470 1320 1330 1340 1350 1360 KIAA01 LSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD :::: :. ... : KIAA12 LSIASAQGNVEVVRTLLDRGLDENHRDDAGWTPLHMAAFEGHRLICEALIEQGARTNEID 480 490 500 510 520 530 >>KIAA0379 ( 1059 res) hh00505s1 (1059 aa) initn: 355 init1: 145 opt: 248 Z-score: 161.5 bits: 41.9 E(): 0.0007 Smith-Waterman score: 248; 31.737% identity (65.868% similar) in 167 aa overlap (1172-1338:758-919) 1150 1160 1170 1180 1190 1200 KIAA01 QKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDADVC ::..: ::::.. ... :.:::. .: KIAA03 PIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNGHETCVELLLEQEVF 730 740 750 760 770 780 1210 1220 1230 1240 1250 1260 KIAA01 NVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSHGRI . . : ...:. :.. :. .: : . .: . ::: :. :.: : :. .. KIAA03 QKTEGN--AFSPLHCAVINDNEGAAEMLI--DTLGASIVNATDSK-GRTPLHAAAFTDHV 790 800 810 820 830 840 1270 1280 1290 1300 1310 1320 KIAA01 DMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGSTALSI . .. ::. .:.:: :. :.: :: :.:.:... :..:... . . :.::. .::: . KIAA03 ECLQLLLSHNAQVNSVDSTGKTPLMMAAENGQTNTVEMLVSSASAELTLQDNSKNTALHL 850 860 870 880 890 900 1330 1340 1350 1360 KIAA01 ALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD : ::. :.:. .. KIAA03 ACSKGHETSALLILEKITDRNLINATNAALQTPLHVAARNGLTMVVQELLGKGASVLAVD 910 920 930 940 950 960 >>KIAA0396 ( 627 res) hg00180s1 (627 aa) initn: 262 init1: 137 opt: 234 Z-score: 156.2 bits: 40.2 E(): 0.0014 Smith-Waterman score: 234; 33.929% identity (60.714% similar) in 168 aa overlap (1175-1339:87-243) 1150 1160 1170 1180 1190 1200 KIAA01 AIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLDADVCNVD .: ::: ... ..::.::::.. . ::. KIAA03 GHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGHFEVVKLLVSHGA-NVN 60 70 80 90 100 110 1210 1220 1230 1240 1250 1260 KIAA01 HQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVSHGRIDMV : . .. ::. : . . . ::. : . . :.. .: ::.:. .:. :.: KIAA03 HTTVTNSTPLRAACF-----DGRLDIVKYLVENNANISIANKYDNTCLMIAAYKGHTDVV 120 130 140 150 160 170 1270 1280 1290 1300 1310 1320 KIAA01 KGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLL---AQPGCNGHLEDNDGSTALSI . :: :: : . :.::: :.: ::..::: :. : ::: : : :.. KIAA03 RYLLEQRADPNAKAHCGATALHFAAEAGHIDIVKELIKWRAAIVVNGH-----GMTPLKV 180 190 200 210 220 1330 1340 1350 1360 KIAA01 ALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD : :. . :.. :: .:.. KIAA03 AAESCKADVVELLLSHADCDRRSRIEALELLGASFANDRENYDIIKTYHYLYLAMLERFQ 230 240 250 260 270 280 >>KIAA1636 ( 1864 res) ff02660 (1864 aa) initn: 190 init1: 148 opt: 238 Z-score: 152.2 bits: 41.0 E(): 0.0023 Smith-Waterman score: 238; 33.333% identity (63.842% similar) in 177 aa overlap (1163-1337:894-1062) 1140 1150 1160 1170 1180 1190 KIAA01 QHEWFRVSSQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGN-GNTALHYSVSHSNFEI .: : :: :. :.::: .......:. KIAA16 AIQQALIAAASMGYTEIVSYLLDLPEKDEEEVERAQINSFDSLWGETALTAAAGRGKLEV 870 880 890 900 910 920 1200 1210 1220 1230 1240 1250 KIAA01 VKLLLDADVCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCG-DVNAKASQAGQT .:::. . : . :. : .:. ...:. . .::. :. : ::: :.. :.: KIAA16 CRLLLEQGAA-VAQPNRRGAVPL----FSTVR-QGHWQIVDLLLTHGADVNM-ADKQGRT 930 940 950 960 970 1260 1270 1280 1290 1300 1310 KIAA01 ALMLAVSHGRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHL ::.:.:.:.. : ::: ::.. ..: :: ::: : .::. .:. :. . . . : KIAA16 PLMMAASEGHLGTVDFLLAQGASIALMDKEGLTALSWACLKGHLSVVRSLVDNGAATDH- 980 990 1000 1010 1020 1030 1320 1330 1340 1350 1360 KIAA01 EDNDGSTALSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD :..: : :..: : ... .: : KIAA16 ADKNGRTPLDLAAFYGDAEVVQFLVDHGAMIEHVDYSGMRPLDRAVGCRNTSVVVTLLKK 1040 1050 1060 1070 1080 1090 >>KIAA1250 ( 1777 res) pf01137 (1777 aa) initn: 292 init1: 160 opt: 227 Z-score: 145.9 bits: 39.8 E(): 0.0052 Smith-Waterman score: 245; 32.161% identity (63.317% similar) in 199 aa overlap (1140-1334:208-393) 1110 1120 1130 1140 1150 1160 KIAA01 LKNTINDPKALTSKDMRFCLNTLQHEWFRVSSQKSAIPAMVGDYIAAFEAI---SPDVLR .:. . : :. : : . . : .:.: KIAA12 TPLVWAARKGHLECVKHLLAMGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPNV-- 180 190 200 210 220 230 1170 1180 1190 1200 1210 1220 KIAA01 YVINLADGNGNTALHYSVSHSNFEIVKLLLDADVCNVDHQNKAGYTPIMLAALAAVEAEK ::.: .::::: . .... :::. :::: . :. ...: : ....:. . ..: KIAA12 ---NLTDKDGNTALMIASKEGHTEIVQDLLDAGT-YVNIPDRSGDT-VLIGAVRGGHVE- 240 250 260 270 280 1230 1240 1250 1260 1270 1280 KIAA01 DMRIVEELFGC-GDVNAKASQAGQTALMLAVSHGRIDMVKGLLACGADVNIQDDEGSTAL ::. :. .:.. .. : ..:::. :: .: ::. .: :. :..: .: : : KIAA12 ---IVRALLQKYADIDIRG-QDNKTALYWAVEKGNATMVRDILQCNPDTEICTKDGETPL 290 300 310 320 330 340 1290 1300 1310 1320 1330 1340 KIAA01 MCASEHGHVEIVKLLLAQPGCNGHLEDNDGSTALSIALEAGHKDIAVLLYAHVNFAKAQS . :.. ..:.:.::: . : . :. :.: : ::... . .: :: KIAA12 IKATKMRNIEVVELLLDK-GAKVSAVDKKGDTPLHIAIRGRSRKLAELLLRNPKDGRLLY 350 360 370 380 390 400 1350 1360 KIAA01 PGTPRLGRKTSPGPTHRGSFD KIAA12 RPNKAGETPYNIDCSHQKSILTQIFGARHLSPTETDGDMLGYDLYSSALADILSEPTMQP 410 420 430 440 450 460 1366 residues in 1 query sequences 1986139 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:10:17 2008 done: Thu Dec 18 15:10:18 2008 Total Scan time: 0.780 Total Display time: 0.220 Function used was FASTA [version 34.26.5 April 26, 2007]