# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02502.fasta.huge -Q ../query/KIAA0171.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0171, 655 aa
 vs ./tmplib.23147 library

1986850 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.5433+/-0.0077; mu= -2.0116+/- 0.522
 mean_var=264.5215+/-62.201, 0's: 0 Z-trim: 4  B-trim: 24 in 1/39
 Lambda= 0.078858

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1065  ( 665 res)   hj05094                     ( 665)  559 77.1 5.6e-15


>>KIAA1065  ( 665 res)   hj05094                          (665 aa)
 initn: 565 init1: 320 opt: 559  Z-score: 360.8  bits: 77.1 E(): 5.6e-15
Smith-Waterman score: 633;  27.176% identity (55.420% similar) in 655 aa overlap (46-625:36-659)

          20        30        40        50        60        70     
KIAA01 GEQEREAADRPARGTMLNMWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMG
                                     :.: :::: : ::::::..::::::..:: 
KIAA10 RTGRFLCLKGFKLITKKIKMTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMT
          10        20        30        40        50        60     

          80        90       100       110       120       130     
KIAA01 EIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHI
       :::  :.    : :.:.:.:.: :.:. ::::.:::.: :: :::..:::::. . ::.:
KIAA10 EIADLTYNVVAFSEIMSMVWKR-LNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENI
          70        80         90       100       110       120    

         140       150       160       170       180       190     
KIAA01 YDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYV----G
       . ...:......:. :::::::.:.: :.:: . .:..::. :: .: :.:....    :
KIAA10 FAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATG
          130       140       150       160       170       180    

                                    200           210              
KIAA01 VSSDSV-----------------------GGFRYSERYDPE----PKSK------WDEEW
       ..:...                       ::   : . .::    :. .       .:: 
KIAA10 MGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEEL
          190       200       210       220       230       240    

      220       230       240       250       260       270        
KIAA01 DKNKSAFPFSDKLGELSDKIGSTIDDTISKFRRKDREDSPERCSDSDEEKKARRGRSPKG
       .  ..  ::  .::  :   :.  .  ..   :  :  ::.  :. .. .    :     
KIAA10 QPLSQRHPFLPHLGLASRPNGDWSQPCLT-CDRAARATSPRVSSELEQARPQTSG-----
          250       260       270        280       290             

      280       290       300       310       320       330        
KIAA01 EFKDEEETVTTKHIHITQATETTTTRHKRTANPSKTIDLGAAAHYTGDKASPDQNASTHT
           :::      . ... .     : .:  . .  ....           : ..     
KIAA10 ----EEELQLQLALAMSREVAEQEERLRR--GDDLRLQMALEESRRDTVKIPKKKEHGSL
          300       310       320         330       340       350  

      340           350       360       370       380       390    
KIAA01 PQSS----VKTSVPSSKSSGDLVDLFDGTSQSTGGSADLFGGFADFGSAAASGSFPSQVT
       ::..    .  ..:::  ... .. . : : ::. ... .:: :  . :..:  .::  :
KIAA10 PQQTTLLDLMDALPSSGPAAQKAEPW-GPSASTN-QTNPWGGPA--APASTSDPWPSFGT
            360       370        380        390         400        

          400       410       420       430       440              
KIAA01 ATSGNGDFGDWSAFNQAPSGPVASSGEFFGSASQPAVELVSGSQSALGP-----PPAASN
         ... :   :.. . : .  : .... .....:::    . ...: :      : ..:.
KIAA10 KPAASID--PWGVPTGATAQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSG
      410         420       430       440       450       460      

     450        460       470       480       490                  
KIAA01 SSDLF-DLMGSSQATMTSSQSMNFSMMSTNTVGLGLPMSRSQNTD------------MVQ
       : .:: .: :. .  ..  ...  :  ....:  .:: . . .:.              .
KIAA10 SFELFSNLNGTIKDDFSEFDNLRTSKKTAESV-TSLPSQNNGTTSPDPFESQPLTVASSK
        470       480       490        500       510       520     

        500       510        520       530                    540  
KIAA01 KSVSKTLPSTWSDPSVN-ISLDNLLPGMQPSKPQQPSLNTMIQ-------------QQNM
        : ..  : ..  :..  ..::.:.   .:. : : ::: ..              : :.
KIAA10 PSSARKTPESFLGPNAALVNLDSLV--TRPAPPAQ-SLNPFLAPGAPATSAPVNPFQVNQ
         530       540       550          560       570       580  

            550       560       570       580       590         600
KIAA01 QQPMNVMTQSFGAVNLSSPSNMLPVRPQTNALIGGPMPMSMPNVMTGTMG--MAPLGNTP
        ::.. ..:  :.  :.. ... :  : ....  . :  . :.   :. :  ..:::  :
KIAA10 PQPLT-LNQLRGSPVLGTSTSFGP-GPGVESMAVASMTSAAPQPALGATGSSLTPLG--P
             590       600        610       620       630          

              610       620       630       640       650     
KIAA01 MMNQSMMGMNMNIGMSAAGMGLTGTMGMGMPNIAMTSGTVQPKQDAFANFANFSK
           .::.:  ..:.  ..   :::                              
KIAA10 ----AMMNMVGSVGIPPSAAQATGTTNPFLL                        
          640       650       660                             




655 residues in 1 query   sequences
1986850 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:10:15 2008 done: Thu Dec 18 15:10:15 2008
 Total Scan time:  0.530 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]