hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19182611/chunk_1/iprscan-20080501-19182611.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0170 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00240 51.3 1.2e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00240 1/1 54 106 .. 1 49 [] 51.3 1.2e-10 Alignments of top-scoring domains: SM00240: domain 1 of 1, from 54 to 106: score 51.3, E = 1.2e-10 *->tvtiGRss.cdivlpspsiSRrHaeiv.dgd....yliDlgenSsNG ++GR ++c++ lp psiS++Haei+ +++ + l+D+g S NG KIAA0170 54 KNVVGRMPdCSVALPFPSISKQHAEIEiLAWdkapILRDCG--SLNG 98 TfVNgrrv<-* T++ + + KIAA0170 99 TQILRPPK 106 //