hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19182611/chunk_1/iprscan-20080501-19182611.nocrc
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Query sequence: KIAA0170
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00498.16.fs FHA domain                                      44.5    1.5e-12   1
PF00498.16.ls FHA domain                                      46.2      1e-10   1
PF00533.16.fs BRCA1 C Terminus (BRCT) domain                  24.9    1.2e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00498.16.fs   1/1      55   125 ..     1    94 []    44.5  1.5e-12
PF00498.16.ls   1/1      55   125 ..     1    94 []    46.2    1e-10
PF00533.16.fs   1/2    1907  1958 ..    27    96 .]    17.4  0.00019
PF00533.16.fs   2/2    1992  2029 ..     1    40 [.     7.6     0.13

Alignments of top-scoring domains:
PF00498.16.fs: domain 1 of 1, from 55 to 125: score 44.5, E = 1.5e-12
                   *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
                      +++GR +d+++ l+ ++        iS++Haeie     + + +   
    KIAA0170    55    NVVGRMPDCSVALPFPS--------ISKQHAEIEILA--WDKAP--- 88   

                   paqvkefgvylrDlssknlnGatfvNgkrl..gngepvrLksGdvirlG<
                             lrD++s+n  G t + + +    +g  +rL++  +i++  
    KIAA0170    89 ---------ILRDCGSLN--G-TQILRPPKvlSPGVSHRLRDQELILFA  125  

                   -*
                     
    KIAA0170     -    -    

PF00498.16.ls: domain 1 of 1, from 55 to 125: score 46.2, E = 1e-10
                   *->vtiGRdsdsddilldddqdiqldgsiSrrHaeieykdggvglelafr
                      +++GR +d+++ l+ ++        iS++Haeie     + + +   
    KIAA0170    55    NVVGRMPDCSVALPFPS--------ISKQHAEIEILA--WDKAP--- 88   

                   paqvkefgvylrDlssknlnGatfvNgkrl..gngepvrLksGdvirlG<
                             lrD++s+n  G t + + +    +g  +rL++  +i++  
    KIAA0170    89 ---------ILRDCGSLN--G-TQILRPPKvlSPGVSHRLRDQELILFA  125  

                   -*
                     
    KIAA0170     -    -    

PF00533.16.fs: domain 1 of 2, from 1907 to 1958: score 17.4, E = 0.00019
                   *->eelieklGGkvtsslskktthvislvgepkypkieiifigsleagts
                      e+ + +lGG++ +    + +h++  +++               ++t 
    KIAA0170  1907    ERAVLALGGSL-AGSAAEASHLV--TDRI--------------RRTV 1936 

                   kkllkakalgipivteeWlldci<-*
                   k +l a+ +gipi++ +Wl ++    
    KIAA0170  1937 K-FLCALGRGIPILSLDWLHQSR    1958 

PF00533.16.fs: domain 2 of 2, from 1992 to 2029: score 7.6, E = 0.13
                   *->p.eklfkgltfvitggldgfereeleleelieklGGkvtss<-*
                       +  l++g+ +++ ++  +++ +++   e+i  +GG++ +s   
    KIAA0170  1992    ReRRLLEGYEIYV-TPGVQPPPPQM--GEIISCCGGTYLPS    2029 

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