hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19151324/chunk_1/iprscan-20080501-19151324.nocrc
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Query sequence: KIAA0168
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00788.13.ls Ras association (RalGDS/AF-6) domain            62.8      1e-15   1
PF00788.13.fs Ras association (RalGDS/AF-6) domain            60.9    1.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00788.13.fs   1/1     181   269 ..     1    97 []    60.9  1.7e-15
PF00788.13.ls   1/1     181   269 ..     1    97 []    62.8    1e-15

Alignments of top-scoring domains:
PF00788.13.fs: domain 1 of 1, from 181 to 269: score 60.9, E = 1.7e-15
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +++ + V+++   +   +++++++++T+++V+++lL Kf++ +++ e
    KIAA0168   181    YNHKTSVFTPAYGS--VTNVRINSTMTTPQVLKLLLNKFKI-ENSAE 224  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   +++L+    v+   ge + +L  +++Pl+++   ++++q s  +L ++++
    KIAA0168   225 EFALY----VVHTSGEKQ-KLKATDYPLIARILQGPCEQISKVFLMEKDQ 269  

                   <-*
                      
    KIAA0168     -     -    

PF00788.13.ls: domain 1 of 1, from 181 to 269: score 62.8, E = 1e-15
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      +++ + V+++   +   +++++++++T+++V+++lL Kf++ +++ e
    KIAA0168   181    YNHKTSVFTPAYGS--VTNVRINSTMTTPQVLKLLLNKFKI-ENSAE 224  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred
                   +++L+    v+   ge + +L  +++Pl+++   ++++q s  +L ++++
    KIAA0168   225 EFALY----VVHTSGEKQ-KLKATDYPLIARILQGPCEQISKVFLMEKDQ 269  

                   <-*
                      
    KIAA0168     -     -    

//