hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-19133613/chunk_1/iprscan-20080501-19133613.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0167 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.ls Putative GTPase activating protein for Arf 223.9 3.4e-64 1 PF01412.9.fs Putative GTPase activating protein for Arf 222.0 1.2e-63 1 PF08477.3.fs Miro-like protein 134.4 1.6e-38 1 PF08477.3.ls Miro-like protein 136.2 8.3e-38 1 PF00169.19.fs PH domain 51.8 2.7e-15 1 PF00169.19.ls PH domain 53.8 5.4e-13 1 PF00023.20.fs Ankyrin repeat 37.1 2.3e-09 2 PF00071.12.ls Ras family -11.4 1.9e-08 1 PF00023.20.ls Ankyrin repeat 35.2 2.1e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08477.3.fs 1/1 80 190 .. 1 139 [] 134.4 1.6e-38 PF00071.12.ls 1/1 80 240 .. 1 174 [] -11.4 1.9e-08 PF08477.3.ls 1/1 80 190 .. 1 139 [] 136.2 8.3e-38 PF00169.19.fs 1/1 349 562 .. 1 92 [] 51.8 2.7e-15 PF00169.19.ls 1/1 349 562 .. 1 92 [] 53.8 5.4e-13 PF01412.9.ls 1/1 583 703 .. 1 137 [] 223.9 3.4e-64 PF01412.9.fs 1/1 583 703 .. 1 137 [] 222.0 1.2e-63 PF00023.20.fs 1/2 742 774 .. 1 33 [] 26.6 1.9e-06 PF00023.20.ls 1/2 742 774 .. 1 33 [] 28.6 2e-05 PF00023.20.ls 2/2 775 807 .. 1 33 [] 6.5 3.3 PF00023.20.fs 2/2 775 800 .. 1 26 [. 10.5 0.062 Alignments of top-scoring domains: PF08477.3.fs: domain 1 of 1, from 80 to 190: score 134.4, E = 1.6e-38 *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya +++V+Gd ++GKSSl++++l+++++ +e ++s+++ KIAA0167 80 RLGVLGDARSGKSSLIHRFLTGSYQ------------VLEKTESEQY 114 vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl +++++vdg+t+l +++++++g++++kf +++aDav+ KIAA0167 115 KKEMLVDGQTHL---------VLIREEAGAPDAKF-------SGWADAVI 148 lvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-* +v++l+d++Sf+ vs+l+++l++lr++g++++ + lvg+++ KIAA0167 149 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 190 PF00071.12.ls: domain 1 of 1, from 80 to 240: score -11.4, E = 1.9e-08 *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt l ++GD GKSsL +RF ++++ + T + y k + vdg+t KIAA0167 80 RLGVLGDARSGKSSLIHRFLTGSYQVL-EKTE-SEQYKKEMLVDGQT 124 vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei I E+ a + A++++ V++ ++ SF+ v + + ++ KIAA0167 125 HLVLIR-----EEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQL 169 lrhad..kdenvpivLVGNKcDLeddedlele.kqkRqVsteeGealAke ++++ +LVG+ D + + R+V ++++al+ + KIAA0167 170 SSLRGegRGG-LALALVGTQ-DRIS------AsSP-RVVGDARARALCAD 210 lgAlpFmETSAKtneNVeeaFeelareilk<-* ++ + ++ET A + NV+ +F+e+a+++ KIAA0167 211 MKRCSYYETCATYGLNVDRVFQEVAQKVVT 240 PF08477.3.ls: domain 1 of 1, from 80 to 190: score 136.2, E = 8.3e-38 *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya +++V+Gd ++GKSSl++++l+++++ +e ++s+++ KIAA0167 80 RLGVLGDARSGKSSLIHRFLTGSYQ------------VLEKTESEQY 114 vdtlevdgdtklenvrlkefllilwDtggreelkfehepiAymktaDavl +++++vdg+t+l +++++++g++++kf +++aDav+ KIAA0167 115 KKEMLVDGQTHL---------VLIREEAGAPDAKF-------SGWADAVI 148 lvyDlsdpeSfervsslikwlpnlrklgkkaiPvilvgnKlD<-* +v++l+d++Sf+ vs+l+++l++lr++g++++ + lvg+++ KIAA0167 149 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 190 PF00169.19.fs: domain 1 of 1, from 349 to 562: score 51.8, E = 2.7e-15 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.....kkpk +ik+ +Llk+++++ +k+wkk y++L+++ +l+y ++ ++ ++++ KIAA0167 349 PIKQSFLLKRSgnsLNKEWKKKYVTLSSNGFLLYHPSIndyihSTHG 395 gsipLsgiqvtkvpdn.................................. + ++L +v+ + + +++ + +++ + ++ ++ ++ + +++ + ++ KIAA0167 396 KEMDLLRTTVKVPGKRppraisafgpsasinglvkdmstvqmgegleatt 445 .................................................. + +++++++++ ++++++++++ +++++ + +++ +++++ ++ +++ KIAA0167 446 pmpspspspsslqpppdqtskhllkpdrnlaralstdctpsgdlsplsre 495 .............................krkncFeirt.dretlllqae +++++ +++++++ +++++++++ ++ +++++ F i++++++t++++a+ KIAA0167 496 pppspmvkkqrrkklttpsktegsagqaeEENFEFLIVSsTGQTWHFEAA 545 seeerkeWvkaiqsair<-* s eer Wv+ai+s+i KIAA0167 546 SFEERDAWVQAIESQIL 562 PF00169.19.ls: domain 1 of 1, from 349 to 562: score 53.8, E = 5.4e-13 *->vikeGwLlkkg...gkkswkkRyfvLfddvLlyykdkk.....kkpk +ik+ +Llk+++++ +k+wkk y++L+++ +l+y ++ ++ ++++ KIAA0167 349 PIKQSFLLKRSgnsLNKEWKKKYVTLSSNGFLLYHPSIndyihSTHG 395 gsipLsgiqvtkvpdn.................................. + ++L +v+ + + +++ + +++ + ++ ++ ++ + +++ + ++ KIAA0167 396 KEMDLLRTTVKVPGKRppraisafgpsasinglvkdmstvqmgegleatt 445 .................................................. + +++++++++ ++++++++++ +++++ + +++ +++++ ++ +++ KIAA0167 446 pmpspspspsslqpppdqtskhllkpdrnlaralstdctpsgdlsplsre 495 .............................krkncFeirt.dretlllqae +++++ +++++++ +++++++++ ++ +++++ F i++++++t++++a+ KIAA0167 496 pppspmvkkqrrkklttpsktegsagqaeEENFEFLIVSsTGQTWHFEAA 545 seeerkeWvkaiqsair<-* s eer Wv+ai+s+i KIAA0167 546 SFEERDAWVQAIESQIL 562 PF01412.9.ls: domain 1 of 1, from 583 to 703: score 223.9, E = 3.4e-64 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + ++q +r+ + gN+ C DCga pnPtWaS+nlG+++CieCSGiHRn KIAA0167 583 AVAIQAIRNAK-GNSICVDCGA-PNPTWASLNLGALICIECSGIHRN 627 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L G+H+S+V RSl+LD W++e ++l+ ++GN+ an++wEs+ + +++ KIAA0167 628 L-GTHLSRV--RSLDLDDWPRELTLVLT--AIGNDTANRVWESDTRGRAK 672 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* +++ds+ r+++es+i+aKYe++lf+ +++ +e KIAA0167 673 PSRDSS---------REERESWIRAKYEQLLFLAPLSTSE 703 PF01412.9.fs: domain 1 of 1, from 583 to 703: score 222.0, E = 1.2e-63 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + ++q +r+ + gN+ C DCga pnPtWaS+nlG+++CieCSGiHRn KIAA0167 583 AVAIQAIRNAK-GNSICVDCGA-PNPTWASLNLGALICIECSGIHRN 627 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L G+H+S+V RSl+LD W++e ++l+ ++GN+ an++wEs+ + +++ KIAA0167 628 L-GTHLSRV--RSLDLDDWPRELTLVLT--AIGNDTANRVWESDTRGRAK 672 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* +++ds+ r+++es+i+aKYe++lf+ +++ +e KIAA0167 673 PSRDSS---------REERESWIRAKYEQLLFLAPLSTSE 703 PF00023.20.fs: domain 1 of 2, from 742 to 774: score 26.6, E = 1.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* ++PLHlAa+ ++ + +lLl +GAd+ a+d KIAA0167 742 QLRSPLHLAAELAHVVITQLLLWYGADVAARDA 774 PF00023.20.ls: domain 1 of 2, from 742 to 774: score 28.6, E = 2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* ++PLHlAa+ ++ + +lLl +GAd+ a+d KIAA0167 742 QLRSPLHLAAELAHVVITQLLLWYGADVAARDA 774 PF00023.20.ls: domain 2 of 2, from 775 to 807: score 6.5, E = 3.3 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L +A + g+ ++ Ll++G+ KIAA0167 775 QGRTALFYARQAGSQLCADILLQHGCPGEGGSA 807 PF00023.20.fs: domain 2 of 2, from 775 to 800: score 10.5, E = 0.062 *->dGfTPLHlAalrgnlevvklLlsqGA<-* G+T+L +A + g+ ++ Ll++G+ KIAA0167 775 QGRTALFYARQAGSQLCADILLQHGC 800 //