hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19050701/chunk_1/iprscan-20080501-19050701.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0162
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00732                                                  86.5    3.2e-21   1
SM00252                                                  52.5    5.5e-11   1
SM00316                                                  26.1     0.0047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00732    1/1     783   898 ..     1   117 []    86.5  3.2e-21
SM00316    1/1    1225  1286 ..     1    72 []    26.1   0.0047
SM00252    1/1    1336  1425 ..     1    87 []    52.5  5.5e-11

Alignments of top-scoring domains:
SM00732: domain 1 of 1, from 783 to 898: score 86.5, E = 3.2e-21
                   *->krvLGlDpGf.grkriGvAvsDetgkladpleviprkprk......e
                       rvLG+ +   +++ +++A+++++g+++d l+  ++++r++  +++e
    KIAA0162   783    IRVLGIAFSSaRDHPVFCALVNGEGEVTDFLRLPHFTKRRtawreeE 829  

                   ennkdaaaarLkklikkyqvdliviGlPlnmnGtasreterveafaellk
                   + +k++++++Lkk++ + +++++ + +++++ +   ++++  + ++el  
    KIAA0162   830 REKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVK--RIVHELDQ 877  

                   ehpinddlarfnlpvvlvDErlatvyA<-*
                   +++      ++ + v+lvD++la +y+   
    KIAA0162   878 GQQ------LSSIGVELVDNELAILYM    898  

SM00316: domain 1 of 1, from 1225 to 1286: score 26.1, E = 0.0047
                   *->evGdvveGtVtsitpfGafVdlgngveGlihiselsddrvkdpeevl
                       +G+ +          G+  +l+ngv+G+i+   lsd+ vk+pee++
    KIAA0162  1225    CPGQAI----------GVKTRLDNGVTGFIPTKFLSDKVVKRPEERV 1261 

                   kvGdevkvkVlsvdkekgrisLslk<-*
                   kvG +v +++ ++d ek + +L+++   
    KIAA0162  1262 KVGMTVHCRIMKIDIEKFSADLTCR    1286 

SM00252: domain 1 of 1, from 1336 to 1425: score 52.5, E = 5.5e-11
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                      +p +H +i+ ++AEk+  +  +  G+ ++R+S++  ++++++++v +
    KIAA0162  1336    HPSFH-NINFKQAEKMMET--MDQGDVIIRPSSKGENHLTVTWKVSd 1379 

                   gkvkHyrIrrtdd.gkfylggt...prrkFpsL.eLvehYqknslg<-*
                   g ++H  +r++++++ f+lg t   +++ F++L+e+v+ Y ++  +   
    KIAA0162  1380 GIYQHVDVREEGKeNAFSLGATlwiNSEEFEDLdEIVARYVQPMAS    1425 

//