hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19050701/chunk_1/iprscan-20080501-19050701.nocrc
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Query sequence: KIAA0162
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00575.13.fs S1 RNA binding domain                           22.6    4.1e-05   1
PF00017.14.ls SH2 domain                                       3.5     0.0028   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00575.13.fs   1/1    1235  1286 ..    24    79 .]    22.6  4.1e-05
PF00017.14.ls   1/1    1339  1419 ..     1    82 []     3.5   0.0028

Alignments of top-scoring domains:
PF00575.13.fs: domain 1 of 1, from 1235 to 1286: score 22.6, E = 4.1e-05
                   *->dlgengveGfvpiSeisrdkeyrvedpsevlkvGdevkvkvlkvDke
                      +l+ ngv+Gf+p + +s++    v+ p+e++kvG +v   + k+D e
    KIAA0162  1235    RLD-NGVTGFIPTKFLSDK---VVKRPEERVKVGMTVHCRIMKIDIE 1277 

                   rgriiLSik<-*
                   + +++L+++   
    KIAA0162  1278 KFSADLTCR    1286 

PF00017.14.ls: domain 1 of 1, from 1339 to 1419: score 3.5, E = 0.0028
                   *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpq
                        + +I+ k+AE++     +  G+ ++R+S+  +++ t++++  +  
    KIAA0162  1339    --FHNINFKQAEKMMET--MDQGDVIIRPSSKGENHLTVTWKVSDG- 1380 

                   gdrVkHyrIqsldng.......gyyitggvkFssLpeLvehY<-*
                       +H  +++++ ++  + + ++ i  ++ F++L e+v  Y   
    KIAA0162  1381 --IYQHVDVREEGKEnafslgaTLWINSEE-FEDLDEIVARY    1419 

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