hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-19033002/chunk_1/iprscan-20080501-19033002.nocrc
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Query sequence: KIAA0161
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01485.11.fs IBR domain                                      91.9    3.2e-28   2
PF01485.11.ls IBR domain                                      92.7      1e-24   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           15.6    3.6e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.fs   1/2      54   100 ..     1    48 [.    14.2   0.0001
PF01485.11.fs   1/2     125   190 ..     1    72 []    90.8    7e-28
PF01485.11.ls   1/1     125   190 ..     1    72 []    92.7    1e-24

Alignments of top-scoring domains:
PF00097.15.fs: domain 1 of 2, from 54 to 100: score 14.2, E = 0.0001
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss......
                      C +Cl+e+  +     +i  C +      fC  Cl+++++   +++ 
    KIAA0161    54    CKLCLGEYPVEQ--MTTIAQCQCI-----FCTLCLKQYVELlikegl 93   

                   sgnttCp<-*
                   ++  +Cp   
    KIAA0161    94 ETAISCP    100  

PF01485.11.fs: domain 1 of 2, from 125 to 190: score 90.8, E = 7e-28
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      ++Y++l++e++v+ +++++wCPa+ C+++++++d++     ++ +++
    KIAA0161   125    QRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVG-----LQTPQP 166  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C +eFC+ Ck++wH+++ C   
    KIAA0161   167 VQCKA-CRMEFCSTCKASWHPGQGC    190  

PF01485.11.ls: domain 1 of 1, from 125 to 190: score 92.7, E = 1e-24
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      ++Y++l++e++v+ +++++wCPa+ C+++++++d++     ++ +++
    KIAA0161   125    QRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVG-----LQTPQP 166  

                   veCskGCgfeFCfnCkeewHgplsC<-*
                   v+C++ C +eFC+ Ck++wH+++ C   
    KIAA0161   167 VQCKA-CRMEFCSTCKASWHPGQGC    190  

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