# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02800.fasta.huge -Q ../query/KIAA0161.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0161, 326 aa
 vs ./tmplib.23147 library

1987179 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.0880+/-0.00531; mu= 18.6377+/- 0.361
 mean_var=101.9378+/-24.163, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.127030

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0708  ( 1753 res)   hh01062b(revised)          (1753)  311 67.9 4.1e-12
KIAA1386  ( 1214 res)   fj06274                    (1214)  165 40.9 0.00038


>>KIAA0708  ( 1753 res)   hh01062b(revised)               (1753 aa)
 initn: 230 init1: 190 opt: 311  Z-score: 309.3  bits: 67.9 E(): 4.1e-12
Smith-Waterman score: 311;  26.906% identity (49.776% similar) in 223 aa overlap (54-266:1306-1515)

            30        40        50        60        70        80   
KIAA01 LPSGFLRDCSAMTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
                                     : .:..    ..      :.   :  : ..
KIAA07 QSYSEDPEPLLLAAGLCVHQAQAVPVRPDHCPVCVSPLGCDDDLPSLCCMHYCCKSCWNE
        1280      1290      1300      1310      1320      1330     

            90       100       110       120        130       140  
KIAA01 YVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAA-EIMQRYKKLQFEREVLFDPCR
       :.   :...:    .:: : :: :       :. .:.. :....:.:  ..  :  . : 
KIAA07 YLTTRIEQNLVLNCTCPIADCPAQP--TGAFIRAIVSSPEVISKYEKALLRGYV--ESCS
        1340      1350      1360        1370      1380        1390 

                150       160       170       180        190       
KIAA01 --TWC--PASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCK-ASWHPGQGCPETMPIT
         :::  : .  . .:. : .:  :     :. :    : .:.    :   .: .    .
KIAA07 NLTWCTNPQGCDRILCR-QGLGCGTT----CSKCGWASCFNCSFPEAHYPASCGHMSQWV
            1400       1410          1420      1430      1440      

           200       210       220       230       240       250   
KIAA01 ----FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLD
           .  : .  : . .      ::::.:.. ::..::: .: : .:.:.::: ::.:  
KIAA07 DDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIEKNEGCLHMTCAKCNHGFCWRCLKSWK
       1450      1460      1470      1480      1490      1500      

           260       270       280       290       300       310   
KIAA01 DDFLLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCK
        .    : :   :                                               
KIAA07 PN----HKDYYNCSAMVSKAARQEKRFQDYNERCTFHHQAREFAVNLRNRVSAIHEVPPP
           1510      1520      1530      1540      1550      1560  

>>KIAA1386  ( 1214 res)   fj06274                         (1214 aa)
 initn: 299 init1: 165 opt: 165  Z-score: 166.2  bits: 40.9 E(): 0.00038
Smith-Waterman score: 324;  28.090% identity (48.689% similar) in 267 aa overlap (13-250:415-675)

                                 10         20        30        40 
KIAA01                   GQRHLSVYKHSRTPGP-GLKTFPLLPSGFLRDCSAMTTARYR
                                     :: : : ...  :::   :   .  ..   
KIAA13 RAHDWDREKLLEAWMSNPENCCQRSGVQMPTPPPSGYNAWDTLPSP--RTPRTTRSSVTS
          390       400       410       420       430         440  

              50            60        70        80        90       
KIAA01 PTWDLALDP----LVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAI
       :  ...:.:       : .:.    : .  .   :   ::  : .....: :.::    :
KIAA13 PD-EISLSPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHNI
             450       460       470       480       490       500 

       100       110       120       130       140       150       
KIAA01 SCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQ
        ::   : .   .  . :: .:. :. .:: .....  :  .:   :::.  :. . .: 
KIAA13 FCPAYDCFQL--VPVDIIESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLT
             510         520       530       540       550         

       160                   170       180       190            200
KIAA01 DVG--------LQTP---QP-VQCKACRMEFCSTCKASWHPGQGCPE----TMPITFL-P
         :        :. :    : :.:   .. ::  : .  :    :       . :: . :
KIAA13 KQGSNTSGSDTLSFPLLRAPAVDCGKGHL-FCWECLGEAHEPCDCQTWKNWLQKITEMKP
     560       570       580        590       600       610        

              210              220       230       240       250   
KIAA01 GETSAAFKMEEDDAPI-------KRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLD
        :  .. .  :: :         : : .::  :...::: .:.: .::. ::: :::   
KIAA13 EELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWK
      620       630       640       650       660       670        

           260       270       280       290       300       310   
KIAA01 DDFLLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCK
                                                                   
KIAA13 KHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRFKNHEHSYQ
      680       690       700       710       720       730        




326 residues in 1 query   sequences
1987179 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:09:51 2008 done: Thu Dec 18 15:09:52 2008
 Total Scan time:  0.340 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]