hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-18532613/chunk_1/iprscan-20080501-18532613.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0155 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07719.7.ls Tetratricopeptide repeat 217.0 3.8e-62 13 PF07719.7.fs Tetratricopeptide repeat 200.4 3.9e-57 15 PF00515.18.ls Tetratricopeptide repeat 195.2 1.5e-55 9 PF00515.18.fs Tetratricopeptide repeat 183.7 4.3e-52 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/9 185 218 .. 1 34 [] 25.3 0.0002 PF07719.7.ls 2/13 185 218 .. 1 34 [] 24.7 0.0003 PF00515.18.fs 2/12 185 218 .. 1 34 [] 23.3 1.2e-05 PF00515.18.fs 3/12 220 253 .. 1 34 [] 28.7 3.7e-07 PF00515.18.ls 2/9 220 253 .. 1 34 [] 30.7 4.9e-06 PF07719.7.ls 3/13 220 253 .. 1 34 [] 23.5 0.00069 PF00515.18.fs 4/12 328 361 .. 1 34 [] 19.6 0.00014 PF00515.18.ls 3/9 328 361 .. 1 34 [] 21.6 0.0026 PF07720.3.ls 3/4 328 361 .. 1 38 [] 9.5 0.63 PF07719.7.ls 5/13 363 396 .. 1 34 [] 28.7 1.9e-05 PF07719.7.fs 5/15 363 396 .. 1 34 [] 26.7 1.9e-06 PF00515.18.fs 5/12 363 396 .. 1 34 [] 23.3 1.2e-05 PF00515.18.ls 4/9 363 396 .. 1 34 [] 25.3 0.0002 PF00515.18.ls 5/9 473 506 .. 1 34 [] 16.4 0.055 PF00515.18.fs 6/12 473 506 .. 1 34 [] 14.4 0.0043 PF07719.7.ls 7/13 473 506 .. 1 34 [] 23.1 0.00095 PF07719.7.ls 8/13 519 552 .. 1 34 [] 21.5 0.0028 PF00515.18.fs 7/12 519 552 .. 1 34 [] 18.7 0.00026 PF00515.18.ls 6/9 519 552 .. 1 34 [] 20.7 0.0049 PF00515.18.fs 8/12 553 586 .. 1 34 [] 27.5 8e-07 PF07719.7.ls 9/13 553 586 .. 1 34 [] 26.4 9.2e-05 PF00515.18.ls 7/9 553 586 .. 1 34 [] 29.5 1.1e-05 PF00515.18.fs 11/12 703 731 .. 1 29 [. 17.6 0.00054 PF00515.18.ls 8/9 703 736 .. 1 34 [] 17.8 0.036 PF00515.18.ls 9/9 739 772 .. 1 34 [] 7.8 0.58 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 9, from 185 to 218: score 25.3, E = 0.0002 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++ + +++++y A+++y+kAL+ +P + KIAA0155 185 IPALLGKACISFNKKDYRGALAYYKKALRTNPGC 218 PF07719.7.ls: domain 2 of 13, from 185 to 218: score 24.7, E = 0.0003 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* al +++ ++++dy Al++y+kAl+ +P + KIAA0155 185 IPALLGKACISFNKKDYRGALAYYKKALRTNPGC 218 PF00515.18.fs: domain 2 of 12, from 185 to 218: score 23.3, E = 1.2e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ ++ + +++++y A+++y+kAL+ +P + KIAA0155 185 IPALLGKACISFNKKDYRGALAYYKKALRTNPGC 218 PF00515.18.fs: domain 3 of 12, from 220 to 253: score 28.7, E = 3.7e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae+ +G+++ kl+k+++A a+ +ALel+ ++ KIAA0155 220 AEVRLGMGHCFVKLNKLEKARLAFSRALELNSKC 253 PF00515.18.ls: domain 2 of 9, from 220 to 253: score 30.7, E = 4.9e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae+ +G+++ kl+k+++A a+ +ALel+ ++ KIAA0155 220 AEVRLGMGHCFVKLNKLEKARLAFSRALELNSKC 253 PF07719.7.ls: domain 3 of 13, from 220 to 253: score 23.5, E = 0.00069 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae+ +G + kl+++e+A+ a+ +Alel+ ++ KIAA0155 220 AEVRLGMGHCFVKLNKLEKARLAFSRALELNSKC 253 PF00515.18.fs: domain 4 of 12, from 328 to 361: score 19.6, E = 0.00014 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae +y+l+ ++ +++yd+A ++y +A + + KIAA0155 328 AESCYQLARSFHVQEDYDQAFQYYYQATQFASSS 361 PF00515.18.ls: domain 3 of 9, from 328 to 361: score 21.6, E = 0.0026 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae +y+l+ ++ +++yd+A ++y +A + + KIAA0155 328 AESCYQLARSFHVQEDYDQAFQYYYQATQFASSS 361 PF07720.3.ls: domain 3 of 4, from 328 to 361: score 9.5, E = 0.63 *->leylyslWLAavfynkgkyqeAeelfsYallaildken<-* e y l A +f+ +++y++A ++ Y +++ ++ KIAA0155 328 AESCYQL--ARSFHVQEDYDQAFQY--YYQATQFASSS 361 PF07719.7.ls: domain 5 of 13, from 363 to 396: score 28.7, E = 1.9e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + + lG+ y+++gd e A +++ek+l+ +Pnn KIAA0155 363 VLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNN 396 PF07719.7.fs: domain 5 of 15, from 363 to 396: score 26.7, E = 1.9e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + + lG+ y+++gd e A +++ek+l+ +Pnn KIAA0155 363 VLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNN 396 PF00515.18.fs: domain 5 of 12, from 363 to 396: score 23.3, E = 1.2e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + ++ lG+ y +g+ + A +++ek+L+ Pnn KIAA0155 363 VLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNN 396 PF00515.18.ls: domain 4 of 9, from 363 to 396: score 25.3, E = 0.0002 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + ++ lG+ y +g+ + A +++ek+L+ Pnn KIAA0155 363 VLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNN 396 PF00515.18.ls: domain 5 of 9, from 473 to 506: score 16.4, E = 0.055 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +e+++n G+++++lg++ eA +++ L+ KIAA0155 473 PEILNNVGALHFRLGNLGEAKKYFLASLDRAKAE 506 PF00515.18.fs: domain 6 of 12, from 473 to 506: score 14.4, E = 0.0043 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +e+++n G+++++lg++ eA +++ L+ KIAA0155 473 PEILNNVGALHFRLGNLGEAKKYFLASLDRAKAE 506 PF07719.7.ls: domain 7 of 13, from 473 to 506: score 23.1, E = 0.00095 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +e+l+n G ++++lg++ eA++++ ++l+ ++ KIAA0155 473 PEILNNVGALHFRLGNLGEAKKYFLASLDRAKAE 506 PF07719.7.ls: domain 8 of 13, from 519 to 552: score 21.5, E = 0.0028 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* + ynl+++y+++ ++ eA+++y+ l+ Pn+ KIAA0155 519 VTTSYNLARLYEAMCEFHEAEKLYKNILREHPNY 552 PF00515.18.fs: domain 7 of 12, from 519 to 552: score 18.7, E = 0.00026 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + ynl+ +y+++ ++ eA++ y+ L+ Pn+ KIAA0155 519 VTTSYNLARLYEAMCEFHEAEKLYKNILREHPNY 552 PF00515.18.ls: domain 6 of 9, from 519 to 552: score 20.7, E = 0.0049 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* + + ynl+ +y+++ ++ eA++ y+ L+ Pn+ KIAA0155 519 VTTSYNLARLYEAMCEFHEAEKLYKNILREHPNY 552 PF00515.18.fs: domain 8 of 12, from 553 to 586: score 27.5, E = 8e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++y +lG+ + +g++ eA + +++AL+++ ++ KIAA0155 553 VDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 586 PF07719.7.ls: domain 9 of 13, from 553 to 586: score 26.4, E = 9.2e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ++++ +lG ++ +g++ eA +++++Al+++ ++ KIAA0155 553 VDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 586 PF00515.18.ls: domain 7 of 9, from 553 to 586: score 29.5, E = 1.1e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +++y +lG+ + +g++ eA + +++AL+++ ++ KIAA0155 553 VDCYLRLGAMARDKGNFYEASDWFKEALQINQDH 586 PF00515.18.fs: domain 11 of 12, from 703 to 731: score 17.6, E = 0.00054 *->aeayynlGnaylklgkydeAieayekALe<-* ++++ nl+++y ++++y A++ ye +L+ KIAA0155 703 SDVWLNLAHIYVEQKQYISAVQMYENCLR 731 PF00515.18.ls: domain 8 of 9, from 703 to 736: score 17.8, E = 0.036 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++++ nl+++y ++++y A++ ye +L+ ++ KIAA0155 703 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKH 736 PF00515.18.ls: domain 9 of 9, from 739 to 772: score 7.8, E = 0.58 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* e+ l+ a++k gk++e + + kA + P++ KIAA0155 739 TEVVLYLARALFKCGKLQECKQTLLKARHVAPSD 772 //